Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03551 ATGGCAAATCTTTTACCATCAATTTCATTCTCGGTGACTCCACTTAATCAGCACAAATACAGAACCAAATGCTCCTTTTTCCACATCCACAGGAAGCATCAGCAAGATCTCGTTATACCCTTTTCTCAGAATTTCACTTCAAAATTGTGTGCTACATCAAAGTTGTCTATAGAAGAAACTGAGCAGAAAGTGATTCCTTTTACACAATCAGAAGATATCAAAAcatcattgtcttatttgtttAGGACAGAAATAGGTGAAGGTTTGGTTAAAGTTtatgttaaaaagaaaaacgttagttattttgtttatattgagGTTTCTTCTTTGGAGTTATTAAGGAATGTTGCAGGGGAAACATTGGTGTTGTGTTGGGGTGTGTATAGTGATGATTCATCAAGTGTGGATGATGTAAAAGGGATGAATTTGAGTTCATTGGTGAAGAATTCTCTTGGAAATTTTTCAGTTGAATTGGAATTTGATGTTGAAAAAGTTCCTTTTTACTTGTCTTTTTTGTTGAGATTTTCTGGGTTGGAAATTAGAACCCATTTGAAAAAGAATTTCTGTGTGCCTGTTGGTTTTTCTCGGGGTCGTCCGTCTCCATTGGGGATCTCATTTTCCCCTGATGGGTCTATTAATTTCGCCGTTTTTTCAAGACATGCAGAGAGTGTGGTATTGTGTTTatatcatgatgatgatgatactgTTGTGGAGAACCCTGCTTTGGAGATTGATCTTGATCCTTATGTCAATAGATCAGGTGATATTTGGCATATATCTTTCGAGAGTGCAAGGAATTTTGTGAGATATGGTTATCGTTTCAGAGGAGCTAACAGGGATAATAGTTATGCTGAGTGTGTTGTTTTGGATCCTTATGCTAGAATTGTCGGGAATTCATTTCAGAATGGTGTTGGATTGGCGAAGAATCTTGGATTATTGAAAAAGGAACCTGTTTTTGATTGGGGTGATGATTATCATCCGAATTTGGAAATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTATACCGAGCATGAATCAAGTCAACTTTCTAGTGACTTAGCCGGGACATTTTCTGGTTTAGCTAAAAAGTTGCAGCATTTTAAAGATCTTGGCGTGAATGCTGTTCTTTTGGAGCCGGTTTTCACATTTGATGAGAAAAAGGGACCTTATTTTCCTTgtcattttttctctccaatgaACCTTTATGGACCATCCGGCGAATCTGTATCCACTATAAACTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTATAATGGAAGTTGTTTTCTCCAATACTGCTGAGACCAGTGCTCTACAAGGTATTGATGACTTATCTTACTATTATGCAAATGAGGTCGGTGGTTTGAAGGTACACAGTGCTTTGAATTGTAACTATCCTATAGtgcaaaatttgattttggataGTCTTAGGCATTGGGTAACTGAGTTTCACATTGATGGTTTCTCTTTTATAAATGCTTCACATTTGTTGAGGGGGTTTCATGGAGAATACTTGTCTCGACCTCCCTTGGTCGAAGCAATTGCTTTCGATCCGGTATTGtggaaaactaaaataattgCAGATTGTTGGGATCCCAATGACATGGAACCAAAGGAGACTCGTTTTCCTCATTGGATGAGATGGGCtgaaataaatacaaatttccGCAACGATGTAAGGAACTTTCTAAGAGGTGAAAGTCTTATTAGCAATCTTGCAACAAGACTTTGTGGGAGCGGAGACGTATATTCCGATGGAAGAGGCCCAGCATTCTCTTTTAATTACGTTGCTGGGAATTTCGGAGTTTCTCTTGTGGACTTGGTCAGCTTCAGCAGTAGTGATCTGGAGGCGGAGTTGAGTTGGAACTGCGGAGAAGAAGGACCTACCAATAAAACTGCTGTCCTCGAAAGACGACTCAAACAAATCCGTAATTTCTTATTCATCTTGTTTGTGTCATTAGGAGTTCCTATTTTGAACATGGGAGATGAGTGTGGTCACTCTTCTGGTGGTTCTCCTACATATGGTGACACAAAGCCTTTCAATTGGGCTGCTTTGAAAACAGGTTATGGTAAACAAACCAcacaattcatttcctttttgaCTTCATTGAGAACGAGGCGGAGTGATCTTCTTCAAAGTAAGAGCTtcttaaaagaagaaaacatcGAATGGCGTGGAACTGACATGGCTCCGCCAAGATGGGAAGACCCGTCCTCCAGGTTCCTGGCCATGAATTTGAAGGCCGAAAGAAAGGAGCTACAAGAGAGCTCTGCATCTTCTGATATATCAGGggatttatttattgctttcaATGCAGATGATCACCCAAAGACTGTAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTCGATACTGCTCTTCCATTTCCTGGGTTTTTCTTGACCAATGGTGATATTGTCCCTGAGCAAATATCAGGTTTGTATACTTATGAAATGAAATCTTACAGTTGCACTTTGTTTGAGGCAAACAATAGTAATATTTAG 2544 0.3687 MANLLPSISFSVTPLNQHKYRTKCSFFHIHRKHQQDLVIPFSQNFTSKLCATSKLSIEETEQKVIPFTQSEDIKTSLSYLFRTEIGEGLVKVYVKKKNVSYFVYIEVSSLELLRNVAGETLVLCWGVYSDDSSSVDDVKGMNLSSLVKNSLGNFSVELEFDVEKVPFYLSFLLRFSGLEIRTHLKKNFCVPVGFSRGRPSPLGISFSPDGSINFAVFSRHAESVVLCLYHDDDDTVVENPALEIDLDPYVNRSGDIWHISFESARNFVRYGYRFRGANRDNSYAECVVLDPYARIVGNSFQNGVGLAKNLGLLKKEPVFDWGDDYHPNLEMEKLVVYRLNVKRYTEHESSQLSSDLAGTFSGLAKKLQHFKDLGVNAVLLEPVFTFDEKKGPYFPCHFFSPMNLYGPSGESVSTINSMKEMVKTMHANGIEVIMEVVFSNTAETSALQGIDDLSYYYANEVGGLKVHSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLWKTKIIADCWDPNDMEPKETRFPHWMRWAEINTNFRNDVRNFLRGESLISNLATRLCGSGDVYSDGRGPAFSFNYVAGNFGVSLVDLVSFSSSDLEAELSWNCGEEGPTNKTAVLERRLKQIRNFLFILFVSLGVPILNMGDECGHSSGGSPTYGDTKPFNWAALKTGYGKQTTQFISFLTSLRTRRSDLLQSKSFLKEENIEWRGTDMAPPRWEDPSSRFLAMNLKAERKELQESSASSDISGDLFIAFNADDHPKTVVLPLPPEGMSWYRLVDTALPFPGFFLTNGDIVPEQISGLYTYEMKSYSCTLFEANNSNI 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03551 847 CDD E_set_GDE_Isoamylase_N 200 338 IPR044505 -
Tsu07g03551 847 PANTHER GLYCOGEN DEBRANCHING ENZYME 53 845 - -
Tsu07g03551 847 SMART aamy 351 715 IPR006047 GO:0005975
Tsu07g03551 847 CDD AmyAc_plant_IsoA 332 721 IPR044096 GO:0019156|GO:0019252
Tsu07g03551 847 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 201 293 IPR004193 GO:0004553|GO:0005975
Tsu07g03551 847 SUPERFAMILY (Trans)glycosidases 319 719 IPR017853 -
Tsu07g03551 847 Gene3D - 729 847 IPR013780 -
Tsu07g03551 847 Gene3D Glycosidases 315 728 - -
Tsu07g03551 847 SUPERFAMILY E set domains 197 327 IPR014756 -
Tsu07g03551 847 Gene3D Immunoglobulins 187 310 IPR013783 -
Tsu07g03551 847 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 53 845 - -
Tsu07g03551 847 SUPERFAMILY Glycosyl hydrolase domain 728 842 - -
Tsu07g03551 847 Pfam Alpha amylase, catalytic domain 358 445 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03551 Tsu-Chr7 41624318 41627274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03551 25 846 Glycoside Hydrolase AT1G03310 55.713 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03551 K01214 - gmx:100777953 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03551 07 41624318 41627274 Tsu07g03551 07 41624318 41627274 ECH