Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03404 ATGGAAAAACCGCCGCCACTCTTCATCTTCCAAATCATCTTAATATTTCTTTTCACCCAATCACTTCCTGCCACGTCATCATACTCTCCAAAATCCGTTACATTTTCCGTCATCCAATTCGGAGCAACCGGCGATGGCGTCCACTACGACACCGTTTCAATCCAGTCAGCCATCGACTCATGTCCATCCTCCATCCCCTGTCGCGTCACCTTCCCGGCGCCAGGTAAGTACCTGACAGCAACCGTGTTCCTTAGATCCGGCGTGGTGCTGAACGTGGAAACAGGTGCCACCATCTTCGGCGGTCCGAAACTTGAAGATTATCCGAAGGAGTCGTCGAGGTGGTATGTGGTGTTGGCGGAGAACGCGACGGATGTTGGAATTGAAGGCGGCGGTGTTGTCGATGGACAGGCGGAGAAATTTGTAGTGAGATATAATGAGAGGAAGAATGTAATGGTGAGCTGGAATGAGACTGGGAGTTGTTTGGGTGATGAATGTAGACCTAGATTAATCGGTTTTCTTGGATGCAAGAATGTTAAAATCTTCAACATTACACTTAATCAACCTGCTTATTGGTGCTTACACTTGGTAAGAAGTGAAAACATATCAATTCATGATATTGCAATTTATGGAGACTTGAATATACCAAACAACGACGGAATTGACATTGAGGACTCAAATAACACGGTAATCACTCGATGCCACATTGATACAGGCGATGATGCAATCTGTCCAAAATCATCCACTGGCCCTCTTTACAACTTAACAGTCACCGATTGTTGGATTCGATCCAAATCTTCTGCAATCAAATTTGGCAGTGCTAGTTGGTTTGAATTTAAGCATTTTGTCTTTGACAATATCACTATTGTTGATTCTCATAGAGGGCTTGCATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAACATAAGCACAAGATACTATGATCCATTGTGGTGGGGGAGAGCAGAGCCTATCTATGTCACAACTTGCCCAAGAGACTCAACCTCAAAAGAGGCTTCAATCTCAAATGTTCGCTTCATCAATATCACCGCAAATTCTGAAAATGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTGAGAAATTTGAGCTTCATCAACATGAATATCACTTACAGAAGGTTCACGAGTTATGCCGGTGGGTTGTTTGACTATAGGCCAGGATGCCAAGAATTGGTTAAACATAAGACTGCTGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAGCTAGAGCAGTGGAATAATCCTATGGAGTTCAAAACAAATACTGTGAATAACAtccatttttctaattttaattctGTTTTGTATTCAAATAGCAAATCAAGTTCATAA 1410 0.4177 MEKPPPLFIFQIILIFLFTQSLPATSSYSPKSVTFSVIQFGATGDGVHYDTVSIQSAIDSCPSSIPCRVTFPAPGKYLTATVFLRSGVVLNVETGATIFGGPKLEDYPKESSRWYVVLAENATDVGIEGGGVVDGQAEKFVVRYNERKNVMVSWNETGSCLGDECRPRLIGFLGCKNVKIFNITLNQPAYWCLHLVRSENISIHDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPLYNLTVTDCWIRSKSSAIKFGSASWFEFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVRFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTSYAGGLFDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKTNTVNNIHFSNFNSVLYSNSKSSS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03404 469 Gene3D - 18 393 IPR012334 -
Tsu07g03404 469 PANTHER PECTIN LYASE-RELATED 23 461 - -
Tsu07g03404 469 SUPERFAMILY Pectin lyase-like 17 383 IPR011050 -
Tsu07g03404 469 Pfam Glycosyl hydrolases family 28 63 385 IPR000743 GO:0004650|GO:0005975
Tsu07g03404 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 23 461 - -
Tsu07g03404 469 SMART pbh1 198 224 IPR006626 -
Tsu07g03404 469 SMART pbh1 225 246 IPR006626 -
Tsu07g03404 469 SMART pbh1 305 327 IPR006626 -
Tsu07g03404 469 SMART pbh1 251 272 IPR006626 -
Tsu07g03404 469 SMART pbh1 342 367 IPR006626 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03404 32 463 Glycoside Hydrolase AT3G57790 67.494 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03404 - - mtr:MTR_7g092470 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03404 07 40469119 40472503 Tsu07g03404 07 40469119 40472503 ECH