Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g03377 | ATGGTCGATCTTCAACTTCAACtgattcaacaacaacaacctttgTACAGAAACATATGCAACACACTTCTCTCTCTAACATACTCTCGTTCACTCCCCAAAGGTCTTCAACTTCATGCTCACATTATCAAATTAGGTTTACAATCCATCCCTCTTCTTTCCCATCATCTCATCAATTTCTACTCCAAAACCCATCTTCCTTATTCCTCTCTTCAAATCTTCAACGATTCACCTCACAAATCAGCCACTACTTGGAGTTCAATTATCTCTTCATTTGCCCAGAATGACCTTCCTTTACTTTCTCTTCACTTTTTCCGGCTCATGATCCGTCATGGTCTCCCTCCTGATGATCACATTTTCCCTAGTGCTACTAAATCGTGTGGTATTCTAGCTTCACTTCCGGTTGCGCAATCCCTTCATTGTTTTGCTTATAAGACTGCTTACCATGTTGATCTTTTTGTGGGAAGTTCTATTGTAGATATGTATGGTAAATGTTGTGATATTGATGATGCGCGTaaggtgtttgatgaaatgccgTATAGAAATGTTGTTTCTTGGAGTGGTTTGATTTATGGGTATGTTCAGTTGGGTGAGGATGATGAAGCTTTGAGGCTTTTTAAACGGTTTCTTGTTGAGGAAGAAAACGAGGGTGTTAATGATTTTACTTTGTCGAGTGTATTAAGGGTTTGTGGTGGTTCTACTTTGCTTCAAATGGGTAAGCAAATACATGGGTTGAGTTTTAAGACGAGTTTTGATTCGTCTTGTTTTGTCGCGAGTTCTTTGATTTCGTTGTATTCGAAATGTGGGGTTGTTGAAGAAGCTTATGATGTTTTTGAGGAAGTTACCGTTAGAAACCTTGGGATGTGGAATGCTATGTTGATTGCTTGTGCTCAACATGCACACACGAATAAAACATTTGAGTTGTTTGATAAGATGAAGAGTGTTGGTGGTGTGAAGGCtaattttattacatttttgtGTGTGCTTTATGCATGCAGCCATGCAGGGTTGGTAGAGAAAGGTAAGAATTACTTTGAGTTGATGAAGGATTATGGTATTGAACCTGGGACACAACATTATTCAACCTTGGTGGATTTGCTTGGTCGTGCTGGTAAGTTGAACGAAGCAGCTAAGGTGATTGAGGAAATGCCTATGGAACCTACTGAATCTGTTTGGGGAGCTTTGTTAACTGGGTGTAGAATACATGGGAATACTGAATTGGCATCTTATGTAGCTGATAGAGTTTCTGAGACGGGTGCTGTGAGTTCTGGACTTCAAGTTCTGCTTTCTAATGCTTATGCGGCTGCTGGGAGATGGGAGGAAGCGGCGAAAGCGAGGAAAACACTGAGGGACAAAGGAATAAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCATACATTTGCTGCTGGGGATAGGTCTCATGCGAAGTCACTGGAAATTTATGATAAGTTAGAGGAATTGGGAGAAGAAATGGAGAAAGCTGGTTATGTTGCTGATACGTCTTTTGTGTTAAGAGAAGTGGACGGTGAAGAGAAGAGTAGAAGTATTAAGTATCATAGTGAGAGATTAGCTATTGCATTTGGACTTATTACATTCCCTCAGGGACAACCAATTAGAGTGATGAAGAATTTGCGTGTTTGTGGCGATTGTCATACCGCTATCAAGTTTATTAGTAAATGTACTGGAAGGGTTATCATTGTGAGGGACAATAATCGGTTCCATCGATTTGAGGATGGAAAATGTACTTGTGGAGATTATTGGTGA | 1779 | 0.3912 | MVDLQLQLIQQQQPLYRNICNTLLSLTYSRSLPKGLQLHAHIIKLGLQSIPLLSHHLINFYSKTHLPYSSLQIFNDSPHKSATTWSSIISSFAQNDLPLLSLHFFRLMIRHGLPPDDHIFPSATKSCGILASLPVAQSLHCFAYKTAYHVDLFVGSSIVDMYGKCCDIDDARKVFDEMPYRNVVSWSGLIYGYVQLGEDDEALRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGKQIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTNKTFELFDKMKSVGGVKANFITFLCVLYACSHAGLVEKGKNYFELMKDYGIEPGTQHYSTLVDLLGRAGKLNEAAKVIEEMPMEPTESVWGALLTGCRIHGNTELASYVADRVSETGAVSSGLQVLLSNAYAAAGRWEEAAKARKTLRDKGIKKETGLSWVEEGNRVHTFAAGDRSHAKSLEIYDKLEELGEEMEKAGYVADTSFVLREVDGEEKSRSIKYHSERLAIAFGLITFPQGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW | 592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g03377 | 592 | Pfam | E+ motif | 469 | 496 | IPR046849 | - | |
| Tsu07g03377 | 592 | PANTHER | BNAA10G28390D PROTEIN | 10 | 535 | - | - | |
| Tsu07g03377 | 592 | Pfam | E motif | 402 | 464 | IPR046848 | - | |
| Tsu07g03377 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | DYW family of nucleic acid deaminases | 500 | 592 | IPR032867 | GO:0008270 | |
| Tsu07g03377 | 592 | Gene3D | Tetratricopeptide repeat domain | 238 | 334 | IPR011990 | GO:0005515 | |
| Tsu07g03377 | 592 | Gene3D | Tetratricopeptide repeat domain | 138 | 237 | IPR011990 | GO:0005515 | |
| Tsu07g03377 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 81 | 115 | IPR002885 | - | |
| Tsu07g03377 | 592 | PANTHER | OS01G0913400 PROTEIN-RELATED | 10 | 535 | - | - | |
| Tsu07g03377 | 592 | Gene3D | Tetratricopeptide repeat domain | 338 | 529 | IPR011990 | GO:0005515 | |
| Tsu07g03377 | 592 | TIGRFAM | PPR: pentatricopeptide repeat domain | 157 | 178 | IPR002885 | - | |
| Tsu07g03377 | 592 | TIGRFAM | PPR: pentatricopeptide repeat domain | 288 | 316 | IPR002885 | - | |
| Tsu07g03377 | 592 | TIGRFAM | PPR: pentatricopeptide repeat domain | 360 | 383 | IPR002885 | - | |
| Tsu07g03377 | 592 | TIGRFAM | PPR: pentatricopeptide repeat domain | 84 | 116 | IPR002885 | - | |
| Tsu07g03377 | 592 | TIGRFAM | PPR: pentatricopeptide repeat domain | 323 | 356 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | PPR repeat | 156 | 182 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | PPR repeat | 259 | 283 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | PPR repeat | 184 | 208 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | PPR repeat | 84 | 113 | IPR002885 | - | |
| Tsu07g03377 | 592 | Gene3D | Tetratricopeptide repeat domain | 6 | 137 | IPR011990 | GO:0005515 | |
| Tsu07g03377 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 285 | 319 | IPR002885 | - | |
| Tsu07g03377 | 592 | Pfam | Pentacotripeptide-repeat region of PRORP | 292 | 384 | IPR033443 | - | |
| Tsu07g03377 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 151 | 185 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu07g03377 | Tsu-Chr7 | 40228708 | 40230486 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu07g03377 | 31 | 592 | Glycoside Hydrolase | AT3G49170 | 36.364 | 3.23e-123 | 382 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu07g03377 | - | - | lang:109356914 | 936.406 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu07g03377 | 07 | 40228708 | 40230486 | Tsu07g03377 | 07 | 40228708 | 40230486 | ECH |