Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03342 ATGCTTCACAGTGTCACTCCCATTTCAATGGCCACGTCACCACCTAACTGCACCCAACTCGGTGGCGCCACCGAGTCAACTCGTCATCCAAAATCCACAATCACCCGCAAGAAGAACTCCAACGAACTAGCATTCAAGGAGAAAAAGGATGGTTTCGTCGATTACGACAGAGGACAGCACGAAGTATCCACCAGAATCGCCGGCCTCCGCAAGGAAGATATCCCGGCACGATACCGTCTCCGAGTCGCCGGAAACCGTTTTCAAAAGGACTTGACTGTGTCGGAGGTTGTAGACTCTGTCCTCTCTCTCACCCTCCGTGATGACGTTGAAGGCTTACTCAACCGTTGGATAGGTCGCTTCGCACGCAAGAATTTTCCCTTTCTCATTAGGGAGTTGACACAGAGAGGTTCAATTGAACATTGTAACTTAGTTTTCAGCTGGATGAAGGAGCAGAAGAATTATTGTGCTAGAACAGATATATACAACATGATGATTAGGTTGCACGCTAGGCATAATAGAACGGATCAGGCTCGTGGATTGTTTTTCGAGATGCAAAAATACAGGTGTAAACCTGATGCTGAGACTTATAATGCTCTTATTAATGCGCATGGTCGAGCTAGACAATGGCGTTGGGCTATGAATATCATGGAAGACATGTTGCGTGCAGCTATTCCGCCAAGTCGGTCAACTTACAACAACTTGATTAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTtaatatttgcaagaaaatgACTGACAATGGAGTTGGACCTGATCTTGTCACTCACAATATTATGTTATCTGCATTTAAAAGTGGAGCTCAATATTCAAAAGCTTTGTCGTATTTTGAACTAATGAAGGGAACTCATATTCGACCAGACACAACCACACTCAGTATCATCATTCATTGTCTAGTGAAGCTTAAACaatatgacaaagccattgaaatttttaattccATGAGGGAGAAGAAGTCAGAATGTCACCCTGATGTTGTAACATTCACTAGTATCATTCAATTGTATTCTGCGTATGGACAAATTGAAAATTGTGAGTCCGCATTCAATATGATGCTTGCAGAAGGGCTGAAACCAAGTATAGTCTCATACAATTCACTACTAGGTGCATATGCTGCTCGTGGGATGGAAAATGAGGCACTTCGGGTTTTTAATGAGATAACACAAAATGGTTTCCGCCCAGATATTGTATCTTATACATCTCTACTTAATGCTTATGGAAGATCACGAAAACCTCAAAAAGCAAGGGAAATATTCAAAATGATAAAGAGAAACAACTTGAAGCCAAACATTGTCACTTACAATGCACTGATTGATGCCTATGGGTCTAATGGTTTGCTTGAAGAAGCAATTGGAATCTTGCGAGAAATGGAACAAGATAAGATTCATCCGAATGTTGTCTCAATATGCACGCTCTTGGCTGCCTGTGGACGGTGTTGTCAGAAGGTAAAGATTGATACTGTGCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAACACAGCGGCATATAATTCAGCTATTGGAAGCTATATTAATGTGGGGGAATATGACAAAGCTGTAGACTTGTATAAATCTatgagggagaaaaaaataagatCTGATTCTGTTACTTACACTGTCTTGATTAGTGGTTGTTGTAAGATGTCAAAATTTGGGGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTATGTCCAAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACAGGGTCAAATCACAGAAGCAGAGTCTACATTCAACTTGATGAAATCATCAGGTTGCAGTCCAGATGTGGTTACATATACTGCAATGATTGATGCTTACAACACAGCcgAGAAGTGGGAGAAAGCATATGCActctttgaagaaatggaagCAAATGACATCAAGCTAGATACCATCGCATGTGCAGCTCTGATGAGAGCTTTTAACAAAGGTGGCCAACCAGGAAGGGTCTTTAGTCTTGCCCAAAGTATGAGAGAAAAAGACATTCCTTTAAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGTTTATTACATGATTGGAAGACAGCCATTGATGTGATCAAGTACATGGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTGTTCCTGGACTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTAGAATCGGGCGCCGAAGTTAACATCAATacttattctattttattaaaaaacctTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTACTACAATGGATGGAGGATGCAGGAATTCATCCCTCATATGAAATGTACCATGATATATCCTACTTTTCAGAAAAGTGCTGTGGGGCCGAAAATGCTGCCGTCATAAAAGAAAGGCTTGAATCCTTGAAAAGAAAAGGTGAAGATCAAATTTCTCCAAGCCAACCTTGTGAATCTCATGTTCATAGTTGA 2520 0.3913 MLHSVTPISMATSPPNCTQLGGATESTRHPKSTITRKKNSNELAFKEKKDGFVDYDRGQHEVSTRIAGLRKEDIPARYRLRVAGNRFQKDLTVSEVVDSVLSLTLRDDVEGLLNRWIGRFARKNFPFLIRELTQRGSIEHCNLVFSWMKEQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKYRCKPDAETYNALINAHGRARQWRWAMNIMEDMLRAAIPPSRSTYNNLINACGSSGNWKEALNICKKMTDNGVGPDLVTHNIMLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLSIIIHCLVKLKQYDKAIEIFNSMREKKSECHPDVVTFTSIIQLYSAYGQIENCESAFNMMLAEGLKPSIVSYNSLLGAYAARGMENEALRVFNEITQNGFRPDIVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVTYNALIDAYGSNGLLEEAIGILREMEQDKIHPNVVSICTLLAACGRCCQKVKIDTVLSAAEMRGIKLNTAAYNSAIGSYINVGEYDKAVDLYKSMREKKIRSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSVICAYSKQGQITEAESTFNLMKSSGCSPDVVTYTAMIDAYNTAEKWEKAYALFEEMEANDIKLDTIACAALMRAFNKGGQPGRVFSLAQSMREKDIPLSDTIFFEMVSACSLLHDWKTAIDVIKYMEPSLPVISSGCLNLFLDSLGKSGKIETMLKLFFKMLESGAEVNINTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSYEMYHDISYFSEKCCGAENAAVIKERLESLKRKGEDQISPSQPCESHVHS 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03342 839 Pfam PPR repeat 300 327 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
Tsu07g03342 839 SUPERFAMILY HCP-like 228 444 - -
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 470 574 IPR011990 GO:0005515
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 575 647 IPR011990 GO:0005515
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 401 469 IPR011990 GO:0005515
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 753 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Tsu07g03342 839 MobiDBLite consensus disorder prediction 1 38 - -
Tsu07g03342 839 SUPERFAMILY TPR-like 520 645 IPR011990 GO:0005515
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Tsu07g03342 839 Pfam Pentatricopeptide repeat domain 332 381 IPR002885 -
Tsu07g03342 839 Pfam Pentatricopeptide repeat domain 391 453 IPR002885 -
Tsu07g03342 839 Pfam Pentatricopeptide repeat domain 637 681 IPR002885 -
Tsu07g03342 839 Pfam Pentatricopeptide repeat domain 742 793 IPR002885 -
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 101 240 IPR011990 GO:0005515
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Tsu07g03342 839 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 31 797 - -
Tsu07g03342 839 Pfam PPR repeat family 230 273 IPR002885 -
Tsu07g03342 839 Pfam PPR repeat family 582 625 IPR002885 -
Tsu07g03342 839 Pfam PPR repeat family 509 557 IPR002885 -
Tsu07g03342 839 Pfam PPR repeat family 160 203 IPR002885 -
Tsu07g03342 839 PANTHER OS07G0213300 PROTEIN 31 797 - -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Tsu07g03342 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 160 193 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 724 754 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 230 262 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 582 615 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 616 650 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 546 576 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 300 329 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 512 544 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Tsu07g03342 839 TIGRFAM PPR: pentatricopeptide repeat domain 406 440 IPR002885 -
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 276 400 IPR011990 GO:0005515
Tsu07g03342 839 Gene3D Tetratricopeptide repeat domain 661 835 IPR011990 GO:0005515
Tsu07g03342 839 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03342 265 823 Glycosyltransferase AT1G05670 21.269 1.53e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03342 - - gmx:100814643 1416.75