Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03340 ATGGGAACCGCTTCAAGACAGTTAAAAGTTATGCTCACCAAAAATTGGCTCCTCAAAAAACGCCACCCGTTCGTTACTGCTGCTGAGATTTTGCTACCGGCGATTGTGTTGTTGCTATTAGCAGCTGTAAGAACGCGAGTCGATACACAAATTCATCCAGCTCAATCGCACATTCAGAAAGATATGTTTGTAGAAGTGGGGAAAGGTATATCCCCTAACTTTCAACAAGTTTTGGAATCCTTATTGGATAAGAGAGAGTATTTAGCTTTTGCACCAGACACCAATGAAACAAGGATGATGATAGACGTCGTGTCAATCAATTTTCCGATTTTGAAGCTTGTTAGTATTGTATACAAAGATGAGTTAGAGTTGGAGACCTACATTCGATCAGATACTTATGGTACCTGCAATGACGTAAGGAATTGTTCGAATCCCAAAATTAAAGGTGCAATTGTATTTTACGAACAAGGTCCCCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCTGGTTTTCCGGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTTCTGTACCAACAATGCAGTACAGCTTCAGTGGATTTTTGACACTCCAGCAAATggttgattcgttcataatattaATAGCTCAACAACctgaattaaactcaaatgCCAAAACTGTAAAACTTCCTCTTCTAGGACTTAGTGACACTGATTTCTCGCTAAAAGTTCCATGGACTCGGTTTAACCCTACTAACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAGTTCCAGGCAATAGTCAAGGAAGTCATGGGAATATTGTATTTATTGGGGTTTCTCTATCCAGTTTCTCGCCTGATAAGTTATTCTGTGTTTGAGAAGGAACAAAAGATCAAAGAAGGACTCTACATGATGGGCTTAAAAGATGGCATATTTCATATCTCTTGGTTTATCACATATGCTTTGCAGTTTGCGATTTCTTCTGCGGTCATTACAGCTTGCACCATGGATAATATATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTCTTCATCTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACGTTTTTCAAAAGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCATTTCTTGGTGCCTTTTTACCTTATTACACTGTCAACGATGAGGGAGTTTCTATGATCTTGAAGGTTCTTGCTTCTCTGCTTTCACCTACGGCATTTGCTCTGGGTTCTATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGGCTTCGTTGGAGCAACATATGGCGGGAGTCTTCTGGAGTGAACTTCTCCGCATGTCTTCTGATGATGATACTTGATACACTGCTCTATTGTGCAATTGGACTGTATTTCGATAAGGTTCTTCCAAGGGAGTATGGACTACGATATCCATGGAACTTCGTTTTCAAAAAGGACTTCtggagaaagaaaaaagttgTAAATAATTGTAACTCCGGTTTTAAAGTTAAAACTGCTGGTAAGAGTTCTGAGTCAGAAGGCAATCTTTTGGGGCAAGATACTTCCAATCCTGCTATAGAAGCAATAAGCTTAGACATGAAGCAACAGGAGATTGATGGAAGgtGCAttcaaattaggaatttgcATAAAGTGTATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACAAATTACAGCTGACATTATACGAAAATCAGATTCTTGCTCTTCTAGgACATAATGGAGCTGGGAAAAGCACAACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGATTTTTGGAAAGAACATTGTCTCCGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTGACGGTGAAAGAACATTTAGAACTATTTGCCATATTGAAGGGTGCGGAGGAAGACACATTGGAGagcattattattaatatgGCTGATGAGGTGGGCCTGGCTGATAAAATCAACACCGTCGTGAGATCTCTTTCTGGCGGCATGAAGAGGAAATTGTCTCTTGGAATCGCGTTGATTGGTAACAGTAAGGTTATAATTCTTGATGAGCCCACAAGTGGAATGGATCCATACTCGATGCGTTTGACTTGgcagttaataaaaaaaattaagaaggGCAGGATAATTTTGCTAACAACACATtctatggatgaagcagatgaaCTAGGTGACCGGATAGCTATAATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTCGGTTACACTCTAACTCTTGTAAAGTCCGCTCCTACTGCTTCTATAGCTGGTGATATTGTATACCGATATATTCCAACAGCAACCTGTATAAGCGAGGTTGGAACTGAGATTTCCTTCAGACTCCCTATGGCATCCTCCTCAACCTTTGAGAGGATGTTCAGGGAAATTGAAGGTTGCATGAAAAAGCCAGTTTTGAGCATGGAAATAAGTGGCAGTAGTGAAAAAGACAGTTACGGTATTGAAAGTTATGGTATATCTGTAACAACCCTGGAGGAGGTATTCTTGAGAGTTGCTGGATGTGACTATGATGAAGTTGAATGTTTTGAAGAAAATAACCGTTCCCTTATATCAGAATCTGTGGTTTCTCTTCCTTCTAATGACCgtccatcaacaaaaatatgttaTTATAAAGTTTTTGGAAATTATAAGAAGATTATTGGCTTCATGTCTACCATGGTTGGGAGTGCCTGTCATTTAATTTTTGCTGCAGTTATTAGTTTCATCAACTTCATAGGCCTGCAGTGTTGTTGCTGTTGTCTCATTACTACGTCCACCTTTTGGCAACATTCTAAAGCTTTATTTATTAAGAGGGCGATATCTGCTCGGAGGGATCACAAAACAATTATGTTTCAGCTAATGATTCCCACTATCTTCTTGTTTATTGGTCTTCTATTTATGGAGCTCAAGCCACACCCTGATCAGATTTCACTCACTCTTTCAACTTCTTATTTTAATCCTCTATTGAGTGGTGGGGGTGGGGGTGGTCCAATTCCGTTTAACCTATCTTTTCCAATTGCTGAAAAGGTGGCACAAAATGTCAAAGGAGGTTGGATTCAAAGGTGCAACTCAAGCTCATACAAATTCCCCAATTCTGAAAAAGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTTTGGGACCTTCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCGAGGTATGGGGCAATTGTGATGGATGATCAGAACACGGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATCAATCTGATGAATTCTGCAATTCTTAGGCTTGCTAGTCATAACATGAATGCAACAATTCAGACACGCAACCACCCTTTGCCAATGACTCAAAGCCAGCACTTACAACGTCATGATCTGGATGCCTTCTCTGCTGCTGTCATTGTCAATATAGCATTCTCTTTCATTCCTGCCTCATTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAACAACTAATCAGCGGgGTTTCGGTCCTTTCATATTGGGCCTCTACATTTATTTGGGACTTTGTCAGCTTCTTGTTTCCGGCCTCTTTCGCCATAGTTCTCTTTTACATCTTTGGTTTGGATCAGTTTGTTGGAGGAGTTTCTTTGTTACCCACGATCATCATGCTTTTGGAATATGGACTTGCAATTGCTTCGTCAACTTATTGccttacatttttcttttttgaccaTACTGTGGCTCAGAACGTGGTTCTTCTGGTCCACTTTTTTTCTGGATTGATACTGATGGTTATCTCATTCATTATGGGACTCATTCCATCCACAATAAGTGCCAACTCTTTTCTTAAGAACTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGACTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTATATGACTGGAATGTTACGGGTGCTTCCATTTGTTATCTTGCTGTTGAGagcattatttattttttattgacacTTGGGCTTGAAATTTTTCCTTCACTCAAATTGACTCCATTCATGATCAAGAAGTGGTGGcggaaaattaatattttcccACGTAATACTAGTTATCTGGAACCTTTATTAGAACCTTCTCCAGAAACTATTTTTACAGACCTCAACGAAGACGTGGATGTGAAAACAGAAAGAAGTAGAGTACTTTCAGGTTCCATTGACAATGCCATTATCTACTTGCGCAATCTTCGCAAGGTGTATTCTGAAGAGAAGAACCATGGGAAAAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACACTTTCTATGCTATGCGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTAAATATATTGGATATTGTCCACAATTTGATGCTCTGTTGGAATTCTTAACTGTCAAAGAGCATCTTGAGCTCTATGCTAGAATAAAAAGTGTTCCAGACTACACAATAGACAATGTTGTTATGGAAAAGCTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCGTTTTCACTTAGTGGAGggaataaaagaaaactatccGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCCACAGGTAGAATGGATCCCATTGCCAAAAGATTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCAGTTATTCTTACCACCCATAGCATGAATGAAGCTCAAGCCTTGTGTACCAGAATAGGCATTATGgTTGGTGGGCAACTAAGATGCATTGGAAGTCCGCAGCATCTAAAAACAAGATTTGGCAATCATCTAGAACTAGAGTTAAAACCTACTGAAGTGAGCTCTGTGGACTTGCAAACACTCTGCCAAGCTATTCAGGAAATGctttttgatgtcccttctCAACCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGAGGTGCTGATTCCGCCGCCTCAGGAAATACCTCCATTGCAGAGATTAGCTTGACATCAGATATGATAGGCTTAATTGGACGCTGGCTTGGCAACGAAGAACGAGTGAAGACTCTAATGCGCTGTACACCTGTCTGTGATGGGGCCTCTCAGGAACAGTTATCCGAACAATTATTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGgttgtcaaaacaaaaattctCAGAAATTGACTCATTTATTCTAACTTCATTTCGTGGAGCAAAATGCCAGGGATACAATGGTTTAAGCATCAGATACCAGTTACCTTGTGATGCGGACTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAGCAAACAGAGATAGGTTAGGGATTGCAGAGTACAGCCTCAGCCAATCAACTCTAGAGACCATATTTAATCATTTTGCAGCTAATTCATGA 5682 0.3844 MGTASRQLKVMLTKNWLLKKRHPFVTAAEILLPAIVLLLLAAVRTRVDTQIHPAQSHIQKDMFVEVGKGISPNFQQVLESLLDKREYLAFAPDTNETRMMIDVVSINFPILKLVSIVYKDELELETYIRSDTYGTCNDVRNCSNPKIKGAIVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSSVPTMQYSFSGFLTLQQMVDSFIILIAQQPELNSNAKTVKLPLLGLSDTDFSLKVPWTRFNPTNIRIAPFPTREYTDDQFQAIVKEVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHISWFITYALQFAISSAVITACTMDNIFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFLPYYTVNDEGVSMILKVLASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAIGLYFDKVLPREYGLRYPWNFVFKKDFWRKKKVVNNCNSGFKVKTAGKSSESEGNLLGQDTSNPAIEAISLDMKQQEIDGRCIQIRNLHKVYATKKGDCCAVNKLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALIFGKNIVSDIDEIRKVLGVCPQHDILFPELTVKEHLELFAILKGAEEDTLESIIINMADEVGLADKINTVVRSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRYIPTATCISEVGTEISFRLPMASSSTFERMFREIEGCMKKPVLSMEISGSSEKDSYGIESYGISVTTLEEVFLRVAGCDYDEVECFEENNRSLISESVVSLPSNDRPSTKICYYKVFGNYKKIIGFMSTMVGSACHLIFAAVISFINFIGLQCCCCCLITTSTFWQHSKALFIKRAISARRDHKTIMFQLMIPTIFLFIGLLFMELKPHPDQISLTLSTSYFNPLLSGGGGGGPIPFNLSFPIAEKVAQNVKGGWIQRCNSSSYKFPNSEKALADAVEAAGPTLGPSLLSMSEYLMSSFNESYQSRYGAIVMDDQNTDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLASHNMNATIQTRNHPLPMTQSQHLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTIIMLLEYGLAIASSTYCLTFFFFDHTVAQNVVLLVHFFSGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAVESIIYFLLTLGLEIFPSLKLTPFMIKKWWRKINIFPRNTSYLEPLLEPSPETIFTDLNEDVDVKTERSRVLSGSIDNAIIYLRNLRKVYSEEKNHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARKYIGYCPQFDALLEFLTVKEHLELYARIKSVPDYTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGRMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNHLELELKPTEVSSVDLQTLCQAIQEMLFDVPSQPRSLLNDLEICIGGADSAASGNTSIAEISLTSDMIGLIGRWLGNEERVKTLMRCTPVCDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILTSFRGAKCQGYNGLSIRYQLPCDADFSLADVFGLLEANRDRLGIAEYSLSQSTLETIFNHFAANS 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03340 1893 Pfam ABC transporter 1486 1628 IPR003439 GO:0005524
Tsu07g03340 1893 Gene3D - 547 796 IPR027417 -
Tsu07g03340 1893 Gene3D - 1456 1705 IPR027417 -
Tsu07g03340 1893 Pfam ABC-2 family transporter protein 992 1394 - -
Tsu07g03340 1893 Pfam ABC-2 family transporter protein 241 481 - -
Tsu07g03340 1893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 798 IPR027417 -
Tsu07g03340 1893 ProSitePatterns ABC transporters family signature. 1601 1615 IPR017871 GO:0005524
Tsu07g03340 1893 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 6 1318 - -
Tsu07g03340 1893 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1318 1889 - -
Tsu07g03340 1893 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524
Tsu07g03340 1893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1464 1703 IPR003439 GO:0005524
Tsu07g03340 1893 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1318 1889 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu07g03340 1893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1463 1694 IPR027417 -
Tsu07g03340 1893 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Tsu07g03340 1893 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 1318 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu07g03340 1893 CDD ABC_subfamily_A 560 781 - -
Tsu07g03340 1893 CDD ABC_subfamily_A 1464 1691 - -
Tsu07g03340 1893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Tsu07g03340 1893 SMART AAA_5 1494 1681 IPR003593 -
Tsu07g03340 1893 SMART AAA_5 588 770 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03340 Tsu-Chr7 39843108 39867722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03340 560 796 Calmodulin-binding Proteins AT2G36910 26.316 1.10e-17 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03340 K05643 - gmx:100803263 3323.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03340 07 39843108 39867722 Tsu07g03340 07 39843108 39867722 ECH