Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03309 ATGCCATTTTCGATTCGTCTCCATCTCTTTGCAAGACCTTTACTCTCTTCCTCTCTCCTCCACTCTTCGCGCCAGAATGGAATTAGAGAAATAATGAGCAGGATTGGCATGAACACCTGCTCGCTTTCTACTACAGCTGAAGCTTCAGATTTAGAATCTGATGAGATACATGATGATGTTAAAGCAGCACAGAAAAGTAGTGCACTTTCCTTGGCTGTCTCGCAGCTTGCTAGCGAGTTTAGTAAGGAGTCAATGTTATCTTTGTACAAGTTTTTTGGTGTACGCTATGCCAACGTCATATCTACAGGCTCCTTGAAGCTTGACATAGCTCTTGGAATTGGAGGATTACCAAAGGGTAGGATTGTTGAAATATACGGACGAGAAGCAGCTGGTAAGACAACACTTGCCCTTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAGTGCATTAGACCTTTCGCTTGTGGAGTCAATGGGTGTAAATACCAAAAACCTTCTCATCTCAAATCCCGATTGTGCTGAAAATTTGTTGAGCATGGTTGATACACTAACGAAAAGCGGAGCTGTAGACGTGATTGTGGTTGATAGTGTTGCTGCTCTTGTCCCCAAATGCGAACTTGATCAATTGGGAGTTGTTACGAGTCAAGATTTACATTCGCGAATGATGACTCAAGCACTACGGAAGATTAATTATTCATTATCACGCTCCCAGGCTCTCTTAGTTTTTGTTAATCAGGTTAGATTTAGTCCCAAAGCATTTGGGGGACGTGGACCTATGGAAGAGGTCACTTGTGGTGGAAACGCTTTGAGATTCTATGCAGCTGTTCGCTTGCGGCTTTCAAGAATGGGATTGATCAAAACTGAAGATAAGGTTGAGGGTATTACGGTTTGTGCACAAGTGGTAAAAAATAAACTAGCACCAGCATCAATGAAAAAGGCTGAACTCGGAATCAAGTTTGGAAGAGGCTTTTGCCAAGAATCAGAGGTCTTTGATTTGGCTTGTGAACATGGACTCATTATGAAAGATGACGGAAACTACTTTATTGAAGGGGAGGCTTTTAGTAGTAGGGAAGCTGCTGAACTatttttggctaaaaataaaagtatttgTGACAATATGAGAATCATACACAAGGGAAGGGACATTGATCTTGATTATGCTCTTTCCACGCTTCCTACTGTTGTAGGGATATCCTTTTGCCATTGTGGAATGCTTGCTATTTATTCAGCATTGGTGAAAGTAGGTGGAGGGTCATTGAACATAGTTGTATCAAAAGTGGTTGGCCTTCATCTGGTGGGACAACAACTTCACTTGATAATAATGCTAGAACTTACAACACAAACTTTGTTCAGCATGTAA 1386 0.4062 MPFSIRLHLFARPLLSSSLLHSSRQNGIREIMSRIGMNTCSLSTTAEASDLESDEIHDDVKAAQKSSALSLAVSQLASEFSKESMLSLYKFFGVRYANVISTGSLKLDIALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVVTSQDLHSRMMTQALRKINYSLSRSQALLVFVNQVRFSPKAFGGRGPMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCAQVVKNKLAPASMKKAELGIKFGRGFCQESEVFDLACEHGLIMKDDGNYFIEGEAFSSREAAELFLAKNKSICDNMRIIHKGRDIDLDYALSTLPTVVGISFCHCGMLAIYSALVKVGGGSLNIVVSKVVGLHLVGQQLHLIIMLELTTQTLFSM 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03309 461 ProSiteProfiles RecA family profile 2. 262 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tsu07g03309 461 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 6 382 - -
Tsu07g03309 461 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 PRINTS RecA protein signature 361 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu07g03309 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 317 IPR027417 -
Tsu07g03309 461 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tsu07g03309 461 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu07g03309 461 SMART AAA_5 118 292 IPR003593 -
Tsu07g03309 461 Gene3D - 95 389 IPR027417 -
Tsu07g03309 461 PANTHER RECA 6 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03309 Tsu-Chr7 39500495 39505155 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03309 - - gmx:100777423 558.14