Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03275 ATGAAGTTCATTAACCCTAAAAACCTTTCTCCCAAACGTCTCTTCCGttccaaaaaggaaaaatcatCAGTCTCAAGATCCGACCCACCTTCTTTCGGGTCAGCTTCTTCATCCGACGAATCCACTCACAAAGCCGTTGCTGGTGGCTCACAAACACCTACCAGCGTCCTTCCAGAAGTTTCCAGTGAGTGGTCCGATGTTAACGTCGACGTACAGTGGGAGCTTGCTCAAGCTTTTCGTTTAATCGATCGAGATAACGACGGCGTCGTTTCGCGTGAAGAACTCGAAGCAGTTCTCACGCGCCTTGGTGCGCGTCCTCCTAGTTCAGAAGAAATCGAGATGATGCTCAGCGAAGTTGATAGCGATGGTAGAGGTTTCATTAGCGTGGAAACGATCATGAACCGAATTAGTTCCGGTTCCGGTTCGGGTGACGGTTCTGGATCTGGATCCGGTTCGGGTTCGGATCCGGAGGAAGAACTTAGAGAAGCGTTTGAAGTATTTGATACGGATCGAGATGGGAGAATCTCGGCGGAGGAATTGTTGAGGGTTTTTAGAGCGATTGGTGATGAACGGTGCACGTTAGAAGAGTGTAGGCGTATGATAGCAGGTGTTGATAAAAATGGGGATGGGTTTGTGTGTTTTGAAGAGTTTTCTGTTATGATGGAGTTGCAACggtga 678 0.469 MKFINPKNLSPKRLFRSKKEKSSVSRSDPPSFGSASSSDESTHKAVAGGSQTPTSVLPEVSSEWSDVNVDVQWELAQAFRLIDRDNDGVVSREELEAVLTRLGARPPSSEEIEMMLSEVDSDGRGFISVETIMNRISSGSGSGDGSGSGSGSGSDPEEELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIAGVDKNGDGFVCFEEFSVMMELQR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03275 225 CDD EFh 74 130 IPR002048 GO:0005509
Tsu07g03275 225 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Tsu07g03275 225 MobiDBLite consensus disorder prediction 26 63 - -
Tsu07g03275 225 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Tsu07g03275 225 SMART efh_1 196 224 IPR002048 GO:0005509
Tsu07g03275 225 SMART efh_1 159 187 IPR002048 GO:0005509
Tsu07g03275 225 SMART efh_1 74 102 IPR002048 GO:0005509
Tsu07g03275 225 SMART efh_1 111 139 IPR002048 GO:0005509
Tsu07g03275 225 Pfam EF-hand domain pair 75 130 IPR002048 GO:0005509
Tsu07g03275 225 Pfam EF-hand domain pair 157 221 IPR002048 GO:0005509
Tsu07g03275 225 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Tsu07g03275 225 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 7 223 - -
Tsu07g03275 225 ProSiteProfiles EF-hand calcium-binding domain profile. 192 225 IPR002048 GO:0005509
Tsu07g03275 225 CDD EFh 159 221 IPR002048 GO:0005509
Tsu07g03275 225 Gene3D - 70 138 - -
Tsu07g03275 225 MobiDBLite consensus disorder prediction 136 153 - -
Tsu07g03275 225 SUPERFAMILY EF-hand 61 221 IPR011992 -
Tsu07g03275 225 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509
Tsu07g03275 225 MobiDBLite consensus disorder prediction 1 63 - -
Tsu07g03275 225 Gene3D - 150 225 - -
Tsu07g03275 225 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 223 - -
Tsu07g03275 225 MobiDBLite consensus disorder prediction 136 159 - -
Tsu07g03275 225 ProSiteProfiles EF-hand calcium-binding domain profile. 74 105 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03275 Tsu-Chr7 39141461 39142843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03275 8 225 EF-hand Containing Proteins AT3G10190 50.667 2.96e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03275 K13448 - gmx:100815559 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03275 07 39141461 39142843 Tsu07g03275 07 39141461 39142843 ECH