Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03242 ATGGATCAAGGAGAACTTGCACGaatttttcaaatgtttgaTCGAAATGGGGACGGTCGTATTACAAAAAAAGAACTTAGCGACTCATTACAAAATCTTGGTATATGTATCTCCGAACAAGATTTGATCCAAATGATTGAAAAAATCGACGTAAATGGAGATGGATATGTTGACATTGACGAATTTGGTGAGTTATACCAAACGATAATGGATGATAAAGACGAGGAGGAGGATGATATTAAAGAGGCATTCAACGTGTTTGATCAAAATGGAGATGGGTTCATATCGGGCGAGGAATTAAGCGCGGTGTTATCTTCATTGGGATTAAAACATGGAAAAACTTTAGAAGATTGCAAAAATATGATCAAGAAAGTTGATGTGGATGGTGATGGAATGGTTAATTTCAAAGAATTTAAGCAAATGATGAAGGCTGGTGCTTTTGCTGCTGATTCATTAAGTTGA 462 0.3528 MDQGELARIFQMFDRNGDGRITKKELSDSLQNLGICISEQDLIQMIEKIDVNGDGYVDIDEFGELYQTIMDDKDEEEDDIKEAFNVFDQNGDGFISGEELSAVLSSLGLKHGKTLEDCKNMIKKVDVDGDGMVNFKEFKQMMKAGAFAADSLS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03242 153 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Tsu07g03242 153 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Tsu07g03242 153 Gene3D - 69 144 - -
Tsu07g03242 153 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Tsu07g03242 153 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 152 - -
Tsu07g03242 153 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Tsu07g03242 153 Pfam EF-hand domain pair 78 143 IPR002048 GO:0005509
Tsu07g03242 153 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Tsu07g03242 153 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Tsu07g03242 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 152 - -
Tsu07g03242 153 PRINTS Parvalbumin signature 66 84 - -
Tsu07g03242 153 PRINTS Parvalbumin signature 125 138 - -
Tsu07g03242 153 PRINTS Parvalbumin signature 88 104 - -
Tsu07g03242 153 Gene3D - 2 68 - -
Tsu07g03242 153 CDD EFh 83 143 IPR002048 GO:0005509
Tsu07g03242 153 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Tsu07g03242 153 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Tsu07g03242 153 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Tsu07g03242 153 SMART efh_1 117 145 IPR002048 GO:0005509
Tsu07g03242 153 SMART efh_1 41 69 IPR002048 GO:0005509
Tsu07g03242 153 SMART efh_1 79 107 IPR002048 GO:0005509
Tsu07g03242 153 SMART efh_1 5 33 IPR002048 GO:0005509
Tsu07g03242 153 SUPERFAMILY EF-hand 5 142 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03242 Tsu-Chr7 38704412 38705299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03242 1 149 EF-hand Containing Proteins AT3G07490 79.195 2.85e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03242 K13448 - gmx:100806637 266.159