Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03180 ATGCCACGAGGTGTAATTTCTGACGACGAAGATGAGGTTGAGGTTGATATGGATGAGAGAGAGCCTGCTGATGGTGAAGAACTGGAGGAAGAAGGTGGTCGTGAGATGGATGACGATGACgaggatgaagaagaagAAGGGCAAGATGAATATGAAAAGGATGGATTTATAGTTGATGACGTTGAGGAAGAAGAGGAgcatgatgaagaagaaagagCTGAAAGTGACGAAGAGcgtcagaagaagaaaaagaggaagaaaaaGGAGGAGTATGTCcttgatgaagatgattatgAGTTGCTGGAGGacaataatatcaatattcaTCGTCGGAAgGACAGCAAAAAGTTCAAGCGACTGAAAAAGGGTCAAAGGGATACTGAGGAAGGGCACTCTGGACAAGATGATGAAGAGGAGTTTTTTCGAAGTGGTAAAGTTGGGCGAAGTGCCGAGGAGAAGCTTAAACACAGTTTATTTGGCGATGATGAAGGATCTCATCTTGAAGACATTGCTGAAGAGGAGGAGCAAGTAGAAGAGGAGGAGGATGCCGACAtcggagaagaagatgaaatggccGACTTCATTGTggatgaagaagaagttgaTGAGAACGGAGCCCCTGTGAGTAAGACTAGGAAACCGAAGGGTGTAAGAAGGATTAGGCAGGCGCCAGGAGTCTCATCTTCAGCTTTACAAGAAGCTCAAGAATTATTTGGTGATGTCGATGAGTTGCTTGAGGCTCGCAATCAAAGTCGAGAAAAGAATGATTATAAAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTCTCTGAGAAGTATATGACAGAGAACGATGACCGGATTAGGGAGCTCGATATTCCAGAGAGAATGCAGATATCGGAGGAGAGTACTGGTGCTCCTTCACTGGATGGAAGTAGTATAGATGAAGAGAGCCAGTGGATAGTTAATCAACTTAAAGATGGGGCAGTCCCTTGGATTTGCAAGAAAGATTCAAGCTCCCAAAATAAGGAGCTACCAATTGACAAGGATGATATTGTCAGGTTTTTGGAACTGCATCACGTGCAAAAATTAGATaTTCCTTTTATTGCCATGTATCGGAAGGAGGAGTGTTTAAGCTTATTGAAAGACCTGGAGCGGCCTGAAGCTGGTGATGAGAATTGGGATAAGAATGACAAGACACCTACTCTAAAATGGCACAAGATACTTTGGGCTCTACAGGACCTGAACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAATGCCCTCCAATTATACTACAATAAACGGTTTGAAGAAGAGTCTCGCCGTGTATACGATGAAACAAGACTAAACTTAAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAAGAGGCAGAATCAGAGAGAGaggttgatgatgttgactccAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAGTACAAAAGGCCAAAACGGAAGTCAATGTACAGCAGTTTCAGTAAGGCGGGACTGTGGGAGGTTGCAAGCCGGTTCGGTTGTAGTTCTGAGCAACTCGGATTATGTCTATCTGTAGTTCAGCTGCAAGAGTTGGAAGACCCAAAGGAAACACCAGAAGAGGTGGCTTCTAACTTCACATGCACTATGTACGATACCCCTGAAGAAGTACTTAAATGTGCTAGACACATGGCGGCCGTTGAGATAAGTTGTGAGCCTAGCGTAAAGAAACATGTCCGTAGCCACTTTATTGACCATGCTGTGGTGTCAACTTCCCCTACTGCCGATGGAAATATAACCATAGATTCGTTCCATCAGTTTTCTGGAGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGTGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAGGACAAACTCATTCAAGTTACTATTAAGCTTCCTGAAGAGCATCTTAACAAGTTAATAGACCAATTCAATGAGTATTATGTTAGTGATAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGCTGATACTTCAAGATGCAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGCGTCTTAGCAAGCAAAGCAAAGCATTGGGTACTTATGGAGTATGGGAAGGCATTTTGGAATAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAATGATCTTAGCTCGGATGATGAGGCTGCTCCTAGGGTTATGGCTTGCTGTTGGGGCCCTGGAAAGCCACAAACAACATTTGTTATGTTAGATTCTTCGGGAGAAGTGCAAGATGTGCTATACACTGGGTCACTTACTTTAAGGTCACAGAATGTCCATGACCAACAAAGGAAGAAGAATGACCAGGAACGTGTCTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGCTAACTTGTCTTGCACTCGTTTGAAAGAAGATATATATGAGGTTATTTATAAGATGATTGAGGAAAACCCTAGAGATGTTGGACATGATATGGATGGGCTCAGCATTGTGTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCGTCGCAGCAGCTAGGTATAGTGAGACGGGCTGTTGCTCTTGGTCGATTTCTCCAGAACCCATTGGCAATGGTTGCAACATTATGTGGGCCCAGAAAGGAAATATTATCATGGAAATTGAGCCCTTTGGAGAGTTTCCTCAACCCGGATGATAAAATTGGGATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGCTGGCTTGGACATTAATTTAGCAATAAGCCACGAATGGTTATTTGCTCCGTTACAATTTATTTCAGGGCTTGGTCCACGAAAGGCTGCATCCTTGCAGAGATCACTGGTGAGAGCTGGTGCAATTTTTACCCGGAAGGACTTTTTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAACGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGACTTGCTGGATGATACACGAATTCATCCAGAATCGTATATTCTTGCACAGGAGTTGGCCAAAGATGTGTATGAGGAGGATGGCACAGGTGATGCAAATGATGACGATGATGCACTAGAGATGGCCATAGAACATGTGAGAGATCGACCTAGTTATTTGAAAAACCTGGCTGTTGAGGCATACGCTGCTGCAAATAATCGTAAAGACAAAATTGAAACTTTCTATGATATAAAAAGAGAATTGATTCATGGTTTTCAAGATTGGCGTAAGCAATACGAAGAACCAAGTCAGGATGAGGAGTTCTATATGATATCAGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATAGTCCAGGTTACAGTTCGCCGAGTGCAAGCTCAGAAAGCAATATGTGGGCTTGAATCGGGAATGACCGGAATCCTTATGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGgctacatgaaggtgacatgcTCACATGTAAAATCAAGTCAATTCAAAAGAACAGGTATCAAGTCTTCCTTGTTTGTAAAGATAGTGAAATGAGAAGTGATCGGTTACAGAGCAACCATGATTTCGATCCCTATTACCATGAAGACCGGAGCTCCTTACCGAGTGAGCAAGACAAAACCCGGAAAGAAAAGGAGCGTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCCGATGAAGCAATGGAGGTTTGA 3804 0.4098 MPRGVISDDEDEVEVDMDEREPADGEELEEEGGREMDDDDEDEEEEGQDEYEKDGFIVDDVEEEEEHDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKDSKKFKRLKKGQRDTEEGHSGQDDEEEFFRSGKVGRSAEEKLKHSLFGDDEGSHLEDIAEEEEQVEEEEDADIGEEDEMADFIVDEEEVDENGAPVSKTRKPKGVRRIRQAPGVSSSALQEAQELFGDVDELLEARNQSREKNDYKETRLEDEFEPIVLSEKYMTENDDRIRELDIPERMQISEESTGAPSLDGSSIDEESQWIVNQLKDGAVPWICKKDSSSQNKELPIDKDDIVRFLELHHVQKLDIPFIAMYRKEECLSLLKDLERPEAGDENWDKNDKTPTLKWHKILWALQDLNRKWLLLQKRKNALQLYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSSFSKAGLWEVASRFGCSSEQLGLCLSVVQLQELEDPKETPEEVASNFTCTMYDTPEEVLKCARHMAAVEISCEPSVKKHVRSHFIDHAVVSTSPTADGNITIDSFHQFSGVKWLREKPLSKFVDAQWLLIQKAEEDKLIQVTIKLPEEHLNKLIDQFNEYYVSDSVSRSAQLWNEQRKLILQDAIFRFLLPSMEKEARGVLASKAKHWVLMEYGKAFWNKVSVGPYQQKENDLSSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVQDVLYTGSLTLRSQNVHDQQRKKNDQERVLKFMTDHQPHVVVLGAANLSCTRLKEDIYEVIYKMIEENPRDVGHDMDGLSIVYGDESLPRLYENSRISSEQLPSQQLGIVRRAVALGRFLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKIGMVEQVMVDVTNQAGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLAVEAYAAANNRKDKIETFYDIKRELIHGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSDRLQSNHDFDPYYHEDRSSLPSEQDKTRKEKERAKKHFKPRMIVHPRFQNITADEAMEV 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 1212 1239 - -
Tsu07g03180 1267 PIRSF Spt6 3 1267 IPR017072 GO:0032968
Tsu07g03180 1267 SUPERFAMILY RuvA domain 2-like 1017 1106 IPR010994 -
Tsu07g03180 1267 Coils Coil 170 190 - -
Tsu07g03180 1267 ProSiteProfiles S1 domain profile. 1131 1202 IPR003029 GO:0003676
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 115 187 - -
Tsu07g03180 1267 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 87 1266 - -
Tsu07g03180 1267 Pfam HHH domain 1018 1105 IPR041692 -
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 1 97 - -
Tsu07g03180 1267 SMART rnase_8s 742 860 IPR006641 GO:0006139
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 74 94 - -
Tsu07g03180 1267 Pfam Helix-hairpin-helix motif 902 1003 IPR032706 -
Tsu07g03180 1267 Pfam Acidic N-terminal SPT6 37 126 IPR028083 -
Tsu07g03180 1267 SMART S1_6 1129 1202 IPR022967 -
Tsu07g03180 1267 Gene3D - 266 1006 - -
Tsu07g03180 1267 Coils Coil 58 90 - -
Tsu07g03180 1267 SUPERFAMILY RuvA domain 2-like 914 1004 IPR010994 -
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 166 187 - -
Tsu07g03180 1267 Pfam Holliday-junction resolvase-like of SPT6 741 898 IPR028231 -
Tsu07g03180 1267 SUPERFAMILY Ribonuclease H-like 742 898 IPR012337 -
Tsu07g03180 1267 SUPERFAMILY Nucleic acid-binding proteins 1126 1206 IPR012340 -
Tsu07g03180 1267 Gene3D - 499 936 IPR023323 -
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 199 231 - -
Tsu07g03180 1267 Gene3D - 1124 1211 IPR012340 -
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 1212 1247 - -
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 9 73 - -
Tsu07g03180 1267 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 87 1266 IPR017072 GO:0032968
Tsu07g03180 1267 Gene3D - 299 498 IPR023319 -
Tsu07g03180 1267 Gene3D - 1012 1104 IPR042066 -
Tsu07g03180 1267 SUPERFAMILY Tex N-terminal region-like 337 721 - -
Tsu07g03180 1267 Gene3D - 732 1123 IPR037027 GO:0006139
Tsu07g03180 1267 MobiDBLite consensus disorder prediction 120 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03180 Tsu-Chr7 37759385 37768516 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03180 K11292 - gmx:100809136 2092