Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03172 ATGTCAAATCGAAAACGAGGTTCTTTTGTTTCACTTCAGTTAATGTCCCGTTGGAAAAACATCATCGGACTCAATGTTACTGTCACTTCCTTTCTTCAAAAGTATCCTCatgtttttgatttgtttgttcaCCCTTTTAGGAGGAACATGTGTTGTAGAATAACGAGGAAGATGAAGGAGTTGATATTGTTGGAAGATGTTGTTGTGAGACAACATGAGATTGAGGTTGTTAAAAGGGTGAAGAAGTTGCTTATGATGTCTTTGAATGGTACTCTTCATGTGCATGCTTTGAGGTTGAATAGAAGAGAATTGGGTCTTCCTTGTGATTTTAGAGAATCCATTCTTGGGAAATACTGTGATGAGTTTAGGTTGGTTGATTTGGAGATTGTGGCTTTGGTTGGTTGGGATGATGAATTGGGAATAGCTCATGTTGAGAAATGGAGGGAAAGAGAGTATAGAGAGAAATGGTTGAGTGAATTTGAGACCAAGTTTGCATTTCCTATAAATTTCCCAACTGGGTTTAAGATTGAGAGAGGGTTTAGGGAAAAGTTGAAGACTTGGCAAAGGCTTTCTTATACAAAGCCTTATGAGAGAAAAGATGTCAAATGCGGCGGAGAACAACGCTATGAGAAGAGGGCTGTTGCTGTTCTTCATGAGCTTTTGAGTTTGACTGTAGAGAAAATGGTTGAGGTTGATCAATTGGCTCATTTTCGAAGGGATTTTGCTATTGAAGTTAATATGCGCGAGCTACTGCTAAGGCATCCGGGGATATTTTATATATCTACAAAAGGAAATGCTCAAACTGTTTTTCTTAGGGAGGCTTATGAGAAAGGAGGGTTGGTTGAGCCTAATCCGGTGTATGCAGTTCGTAGGAATATGTTAGAGCTTGTGCTATTAGGGCGTAGGAAAACCAAACAATTGTTAGCTTGTGATGAATTTAAGGAAAAAAGCAATACTGTAGTATGTGAAGTAGATGGGGATGTTAAAAGAGAAGGTCCTCGAAGCATCCAAATACCGTTAGATTTAAAGAGAGGGACAAGTAAAGGAGAAGATCCTGATCTGACGACACTAGCGACAGTGACGAGAGAGGTAGAGGAAGAGTCTGTGATTGGAACGGATGAGGATGCAGATCCGGTTGCGACTCGGGAGCGTATTTCAGCACAGTTTGCCGAGTACTTGGACCGTGTGTTGACTCCAAAGCAAAGAGGGGTTGCTGCTATGTATCCTTGGTACACTACGCCTGGAAACATGAGTTGGTATTTCAGGATATCACATCCATACATGATGCCTCTGTCGCCAGGAGATCCACCGATGGCGTGTGAGCTGGAGGCCATTGTACAGGAGGAAGCTGAGGAGGAAGGGCCCCTTGCCTCAAGTCTGACAGATAAAATCAATAGGATGAGGCGGATTGCAGAAGATTTGTTGGCCAGTGGAGAGTTACCGGAGGGATCACGTGCCCGTAGAGATGTGCAGGAAATTTGGGATGTTGGAAATTATGCACGACAGTACCAGAGGAGGGGTGGTCGACATGCGACTTAg 1539 0.425 MSNRKRGSFVSLQLMSRWKNIIGLNVTVTSFLQKYPHVFDLFVHPFRRNMCCRITRKMKELILLEDVVVRQHEIEVVKRVKKLLMMSLNGTLHVHALRLNRRELGLPCDFRESILGKYCDEFRLVDLEIVALVGWDDELGIAHVEKWREREYREKWLSEFETKFAFPINFPTGFKIERGFREKLKTWQRLSYTKPYERKDVKCGGEQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNMRELLLRHPGIFYISTKGNAQTVFLREAYEKGGLVEPNPVYAVRRNMLELVLLGRRKTKQLLACDEFKEKSNTVVCEVDGDVKREGPRSIQIPLDLKRGTSKGEDPDLTTLATVTREVEEESVIGTDEDADPVATRERISAQFAEYLDRVLTPKQRGVAAMYPWYTTPGNMSWYFRISHPYMMPLSPGDPPMACELEAIVQEEAEEEGPLASSLTDKINRMRRIAEDLLASGELPEGSRARRDVQEIWDVGNYARQYQRRGGRHAT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03172 512 Pfam Plant organelle RNA recognition domain 5 301 IPR021099 GO:0003723
Tsu07g03172 512 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 1 338 - -
Tsu07g03172 512 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 338 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03172 Tsu-Chr7 37637305 37643904 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03172 - - vun:114194999 508.449