Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03104 ATGGCCACCGTCCTTCAAACTCCAACATTCCGGCCATCCCCAACGCTATTCACCACCGCCGCCACATCATCCAATCAACCCAAAACATCTAGGGTTTCTATCACATCCTCCAGAAGGAAACTATCACCACTTAAATCCCACCGATTCCCTTCAATTCCCTCCCGCCGGTTCATCAATTTAGTACCTTTTGCTTTCGACGGAGACACCGAGGCTCCTCAAGTTCAAGAACAACCTGAAGTTCAGGTTCTGGATTCTTCAGATGGTGCTGTTGCTGTGGAGGATAGTACAGGTGATGATGAGTTCAGCGACGCTAGTGAAATACCTTCTTCACCTTTGCTAGTATTACTGCAGTCTTACAAAGAAGCATTAGTTAATAATGATGAAGTCAAAGTTGCCGAGTTGGAATCATCATTAAAATCCATTGATGAAGAGATAGCAGGTCTCGAAGGGAAAATAGCTTCTTTATCTGAAGAATTGTCAATAGAGAAAGATCGGAAACTAAGGATTGGTGCAGACTTTGACAATTATCGGAAGAGGACTGAGAGAGATCGCCTTTCACTGGTCACGAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAAGCTCAGATTAAGGTGGAAACAGAGGGAGAGGAGAAAATAAACAACAGCTACCAGAGCATATACAAGCAGTTCATTGAAATTCTAAACTCACTAGGAGTTGAGCCAGTGGAGACGGTTGGAAACCCCTTTGATCCAATGCTACATGAAGCAATTATGCGTGAGGATTCTGCTGAGTTTGAAGAAGGCATCATACTTCAAGAATTCAGAAAAGGGTTTAAACTTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCAGCAAAGCCGGAACAAGCATCACAGGAAGAACGAGTCACAAATGAAATTTCTGAGGACAGTAAAGAGAATGACGGTAGCACAGAAACAGAATCTGCTTGA 1005 0.4398 MATVLQTPTFRPSPTLFTTAATSSNQPKTSRVSITSSRRKLSPLKSHRFPSIPSRRFINLVPFAFDGDTEAPQVQEQPEVQVLDSSDGAVAVEDSTGDDEFSDASEIPSSPLLVLLQSYKEALVNNDEVKVAELESSLKSIDEEIAGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTERDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGNPFDPMLHEAIMREDSAEFEEGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQASQEERVTNEISEDSKENDGSTETESA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03104 334 Pfam GrpE 137 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 Coils Coil 124 165 - -
Tsu07g03104 334 Hamap Protein GrpE [grpE]. 75 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 MobiDBLite consensus disorder prediction 310 334 - -
Tsu07g03104 334 MobiDBLite consensus disorder prediction 1 37 - -
Tsu07g03104 334 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Tsu07g03104 334 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 242 IPR013805 -
Tsu07g03104 334 Gene3D Head domain of nucleotide exchange factor GrpE 242 297 IPR009012 GO:0006457
Tsu07g03104 334 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 PANTHER GRPE PROTEIN 3 312 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 MobiDBLite consensus disorder prediction 294 334 - -
Tsu07g03104 334 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu07g03104 334 Gene3D - 126 240 IPR013805 -
Tsu07g03104 334 PANTHER GRPE PROTEIN HOMOLOG 3 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03104 Tsu-Chr7 37004827 37009138 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03104 K03687 - gmx:100820521 476.478