Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03086 ATGGGCAGCGCCGCCCCAAGGTTCCTCTTCATCCTCCGTCACAACCTCCGTCTCCTCTCTCCCTCTTTCTCCTCTCatttccaccaccaccaccgcaCTCTCTTTTCCTCATTCACTcgttctccttcttcttcttctctcacacCAAAACTTAAACTCAAAGCCTCACATAAACAACAACACATTCACACTCAACCTTCATCATCTTCCCTCGGTGGGACCCATCCATGGCCTGAATTTTCCAGATTTCTCTCTCACATCTCCTCCGCCGGCTACACTTCCACAATTCCTCCCGCTGATGCTTTCCCTCCCACCGGAGAATTGTCACAGGGCGTGGTCAGTGCTTGCTTGACCTTCGCTCAAGATAGACCTAACCTTCTCAGGTTGCTTTCGATGAGAGATATTGCAGTTGTGGTTGAACATGGAACCCCGTTTATGTTCTCAAACTCTGATGATTCTGTTTGGAAGATGAAGTCTTTTGTATCCAACGGTGATTCAACTGCCTTGGACACTGATAAAGCAAATATGGTTGATCTAATGAAATTTATGCTGAGTTATGCAAGTAGCTGCTTGGTCTCTTCAGAAAGGAACAGTCCTTATAACAGAAATCTTGTTGAATCATCAGTCAGAAACCTATTTGGCGAACTTTTCAAGCTGAGTTATAGTGTACCTGGACCTAACTCTTTTGATTCAGAGCAAAATCAAATGCCAGGTGGTAGATTTGGGCGTACAACGCCTCCTGGACAaaatattgaaatgaaaagGGGTGATTGGATTTGCCCAAgGTGTAATTTCATGAATTTTGCAAGAAATGTTAAATGTCTTGAATGTGAGGAAGCAAGACCAAAAAGACAACTGACTGGAGGAGAATGGGAATGTCCTCAGTGTGATTTCCATAATTATGGGAAGAATGTAGTTTGCTTAAGGTGTGATTGCAAGCGTCCTGGACAAACATCTTTGGGTGCCACCAATACCACATCACATCCAGGGTATGGAAATGGAGACAATTCTAATGCTTCAGATATTGATGCTAGGTTAGTGGCTAATGAAGAAAAGGCACAACGTTGGTTTAACAAGGTTTCTCAACTAGACAGCAATTCTGATATTAACAGTGTggttgatgatgaagattttcCAGAAATAATGCCGTTAAGGAAAGGAGTTAATAGATTTGTTGTGAGCACAAGGAAAACTCCATTGGAAAATAGGTTGACCAATGCTCAATACAAGAGAAATTTGGGAAATAACGACACTGCCAGAGTCGAGAATTTAACAGCTTGGGAGTCAGCCAAGTCCCATGATACTCCAGATGACATTCTAGGTCGTTCAACTGGCCTTCCTCAATCTGATTATAGCAACATGGGTGCTGAACAAAATTTCAGTGGAGAAAGGTCACCTTCAATTGCTGGCAACCCTTCACATTTCAAAGATGTGAAAGGGAACAACACTACTACTCCTCCGCCCTTTCCATCATATGCCAGTTCTGGTGACACTGACAGGACACAACTTTCTAATAACTCTACAAGTGAAAATGTCATCGAGGATAAGGAGAAAGCGGAAGCTGAAAAATCTGAGAGATGGTTTAGAAAGATTGTGGAGCTGAATGATGTTCCAGATATAACAAGTGCTATATCCGATGATGATTTCCCTGAAATAATGCCGATGCGTAAAGGCGAAAACCGATTTGTTGTTAGCAAGAAAAAAGACCGGTCCTTGACAACACCAGCATATAAGAGACGTTTGGCTATGGAGCAATCTGGCAATAGCAACTTTGTCCCTTTTGTACCCTTCCCCCAAGATTACTTTACCAAAAAGGACAAGCCACAGGCAGATGGAACAGATTCAACAAATAGGTCCAATGTTGAATCATCCTCAATATCTGAAGCGGCTGAGATGTCAAGTGATGCTAGAACTAGTCCTGAACAGAGTCCAGAGCCTTCTTCTAATCAGAGCTCAAGTAACAACAATCACGTTGGTTCTACTTATGCTGCTACAAGCAGTGGAAATTCAAGTCAGAGTTTCAATCAAGATCATGTGCCAAATTTGAAAGAGAGTTCATCCACAGGTTCAGCATCTGAGAACCAGAGTGTTGGAACAGAATGGACAGGGAAGAGTTTAGAGGGGTCGGCGGTCAGGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAAAGGTGGTTCCGTCGCGTTGCGCAGATTAAGGATATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCGTCAATAATGCCTATGCGTAAAGGGGTGAATAGATTTGTTGTGAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAGTACCGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTTAAAAGAGAAAATGAAGGTAGCTGA 2400 0.4167 MGSAAPRFLFILRHNLRLLSPSFSSHFHHHHRTLFSSFTRSPSSSSLTPKLKLKASHKQQHIHTQPSSSSLGGTHPWPEFSRFLSHISSAGYTSTIPPADAFPPTGELSQGVVSACLTFAQDRPNLLRLLSMRDIAVVVEHGTPFMFSNSDDSVWKMKSFVSNGDSTALDTDKANMVDLMKFMLSYASSCLVSSERNSPYNRNLVESSVRNLFGELFKLSYSVPGPNSFDSEQNQMPGGRFGRTTPPGQNIEMKRGDWICPRCNFMNFARNVKCLECEEARPKRQLTGGEWECPQCDFHNYGKNVVCLRCDCKRPGQTSLGATNTTSHPGYGNGDNSNASDIDARLVANEEKAQRWFNKVSQLDSNSDINSVVDDEDFPEIMPLRKGVNRFVVSTRKTPLENRLTNAQYKRNLGNNDTARVENLTAWESAKSHDTPDDILGRSTGLPQSDYSNMGAEQNFSGERSPSIAGNPSHFKDVKGNNTTTPPPFPSYASSGDTDRTQLSNNSTSENVIEDKEKAEAEKSERWFRKIVELNDVPDITSAISDDDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRLAMEQSGNSNFVPFVPFPQDYFTKKDKPQADGTDSTNRSNVESSSISEAAEMSSDARTSPEQSPEPSSNQSSSNNNHVGSTYAATSSGNSSQSFNQDHVPNLKESSSTGSASENQSVGTEWTGKSLEGSAVREPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKRENEGS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03086 799 MobiDBLite consensus disorder prediction 427 520 - -
Tsu07g03086 799 ProSitePatterns Zinc finger RanBP2-type signature. 291 310 IPR001876 -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 445 468 - -
Tsu07g03086 799 SMART zf_4 289 313 IPR001876 -
Tsu07g03086 799 SMART zf_4 256 280 IPR001876 -
Tsu07g03086 799 ProSiteProfiles Zinc finger RanBP2 type profile. 254 283 IPR001876 -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 37 74 - -
Tsu07g03086 799 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 4 798 - -
Tsu07g03086 799 PANTHER ZINC FINGER PROTEIN 4 798 - -
Tsu07g03086 799 Pfam Zn-finger in Ran binding protein and others 289 315 IPR001876 -
Tsu07g03086 799 Pfam Zn-finger in Ran binding protein and others 255 282 IPR001876 -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 60 74 - -
Tsu07g03086 799 Gene3D - 285 317 - -
Tsu07g03086 799 Gene3D - 247 284 - -
Tsu07g03086 799 SUPERFAMILY Ran binding protein zinc finger-like 248 283 IPR036443 -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 613 703 - -
Tsu07g03086 799 ProSitePatterns Zinc finger RanBP2-type signature. 258 277 IPR001876 -
Tsu07g03086 799 ProSiteProfiles Zinc finger RanBP2 type profile. 287 316 IPR001876 -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 581 720 - -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 37 53 - -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 770 799 - -
Tsu07g03086 799 MobiDBLite consensus disorder prediction 476 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03086 Tsu-Chr7 36772246 36777704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03086 74 320 EF-hand Containing Proteins AT1G55040 31.667 2.01e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03086 - - cam:101505193 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03086 07 36772246 36777704 Tsu07g03086 07 36772246 36777704 ECH