Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03059 ATGCTAACATGTAGCACCTTCCACGGACCTTCTACATTCCACCGCCATTCTCAACCTTCTAAATTCCTACTCTCCAAGCCTATCCTCTTCCCTCCCCGGCCTCGCTTCGCCGCTGAGTTCTGGAAATTAAAGTTCCGTTCTCTGTTTTCTAGTAAAATCCGTCGTCACAGTTTCGGTGTCAAAGCTTCTGTTGACTCATCGTCGGAGGTTTTAGAGTCAATTGATGTTGATAGCCCGCACATTGGACCACAACGGTATTCTGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATGGGAAGGCAAGCAAGTGGTTCTGTTACTGTTACAGATGGAGAAACTGTTTTGTACACCACTGTTTGTTTGTCTGATATTCCTAGCGAGCCATCCGATTTTTTCCCTCTTTCTGTGAATTATCAAGAGCGCTTATCAGCTGCTGGTCGCACTAGCGGAGGTTTTTTTAAACGAGAAGGAAAGACAAAGGATCATGAGGTTCTTATTTGTAGATTAATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACTACGAAACTCAAATATTATCTTGGGTTTTAAGCTATGACGGAATGCATATCCCCGATTCCTTGGCTGTCACTGCAGCTGGCATAGCACTTGCACTTTCAGAAGTGCCTACGTCAAAAACAGTTGCTGGAGTTCGAGTTGGCCTTGTTGGTGATAAGTATATAGTAAATCCTACAAATGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATGGGAATTTTCTTCCAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTCAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAACTTGCCTCCTCCCGAGCTTTATAAACATGTCGAGGAAATTGCTGGTGATGAATTGGTAAAAGCTCTtcaaattagaaacaaaatacCAAGAAGGAAAGCCCTTTCATCATTAGAACTAAAGGTTCTTAAGATACTTACAGAAAATGGGTATGTCTCAAATGATTCAGCACCAAGGAGTAATACTGAAACCATCGCAGAGATTCTtgaggaagaggatgaagatgaGGAAGTAATTGTTGATGGTCAAGTTGATGAAGGGGATGTTCATATAAAGCCTACTCCACGCAAACCAACACCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACATCCATGTTTTGGAGGAAACGTATAGTGGAGGGTGGGAAAAGGAGCGATGGGAGAACACCACACGAAATCCGACCAATTAACTCAAGTTGTGGCCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAGACACAGTCGCTAGCTGTTGCTACAATTGGAGACAACAAGATGGCACAACGAGTAGAGAATCTTATAGTTGATGATTACAAGAGGTTCTATCTGCAGTATTCGTTTCCTCCCTCGTGTGTTGGGGAGGTTGGCCGGCTTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGGTCGCTTGAAACAATTTTGCCTTCTGGTGATGATTTTCCTTACACTATTCGTGTTGAGAGTACTATCACAGAAAGCAATGGATCTTCAAGcATGGCATCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAATGCTCTATTGCTGGAATTGCAATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACCCCGCTTATTCTGTCTGACATAACTGGATCTGAAGATGCATCCGGAGATATggattttaagGTTGCTGGGAATGAAGATGGCATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAAAGAAGCACTGCTACAGGCAAGAGACGGCAGAAAACATATACTTGGAGAAATGATGAAATGCTCGCCCCCTCCAGCAAAAACCCTTTCCAATTATGCTCCTCTGATTCACATTATGAAGgttAGACCGGATAAAGTAAATCTTATAATCGGTTCCGGTGGGAAAAAAGTGAAGAGCATTATTGAGAAATGTGGAATAGAGGCTATTGAAGCTGATGAGGACGGCACTGTGAAAATATTTGCGAGAGATTTGGCTGGTTTAGAGAAGTCTAAGGCTATCATTAGTGGTTTAACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATAAAATCAGTAGTTCCATATGGAGTTTTTGTAGAGATAGCATTTGGACAAGAGGGACTTTGTCATATTAGTGAACTGAGTTCAGGTTATCTAGCTAAGGCAGAAGATGCTTTCAAGGTGGGAGATCGTATtgatgtaaaacttaaagagATAAATGAAAAGGGACAGTTGCGTCTAAGTCGCCGAGCATTGCTTCCTGATGCAGCTTCAGACAGTTCAAATTCAAGTGATAAGGGTTCATTGGAAGAAGTTACCACTGGTTTATTTGAAGAGAAAACTGGAAAGCCTAATGATAAGGCTAACACACCTAAAGGCACAGCCTCATCTAAAAGAAGTTCAGAGGACAATTCTGTACTTCCATCAAAAAAGGTTATCAGGAGATCGGTAAGCCCTTCCCAGGACAAGCCTGTCTCGAACAAAGGCAAGATAAAGAAGAGCGGCAACAAAGCAGTCAGTAGTCTCTCTAGCAAAGATGAAAGTAGTTTGGTTGGTGAAGAGGCATAG 2802 0.4172 MLTCSTFHGPSTFHRHSQPSKFLLSKPILFPPRPRFAAEFWKLKFRSLFSSKIRRHSFGVKASVDSSSEVLESIDVDSPHIGPQRYSVKIPVGDRHILVETGHMGRQASGSVTVTDGETVLYTTVCLSDIPSEPSDFFPLSVNYQERLSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYYETQILSWVLSYDGMHIPDSLAVTAAGIALALSEVPTSKTVAGVRVGLVGDKYIVNPTNEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAINLPPPELYKHVEEIAGDELVKALQIRNKIPRRKALSSLELKVLKILTENGYVSNDSAPRSNTETIAEILEEEDEDEEVIVDGQVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSMFWRKRIVEGGKRSDGRTPHEIRPINSSCGLLPRAHGSALFTRGETQSLAVATIGDNKMAQRVENLIVDDYKRFYLQYSFPPSCVGEVGRLGAPSRREIGHGMLAERSLETILPSGDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMKEALLQARDGRKHILGEMMKCSPPPAKTLSNYAPLIHIMKVRPDKVNLIIGSGGKKVKSIIEKCGIEAIEADEDGTVKIFARDLAGLEKSKAIISGLTMVPTIGDIYRNCEIKSVVPYGVFVEIAFGQEGLCHISELSSGYLAKAEDAFKVGDRIDVKLKEINEKGQLRLSRRALLPDAASDSSNSSDKGSLEEVTTGLFEEKTGKPNDKANTPKGTASSKRSSEDNSVLPSKKVIRRSVSPSQDKPVSNKGKIKKSGNKAVSSLSSKDESSLVGEEA 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03059 933 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 320 450 IPR036456 GO:0003723|GO:0006396
Tsu07g03059 933 ProSiteProfiles S1 domain profile. 759 828 IPR003029 GO:0003676
Tsu07g03059 933 CDD RNase_PH_PNPase_2 453 680 - -
Tsu07g03059 933 CDD RNase_PH_PNPase_1 86 312 - -
Tsu07g03059 933 MobiDBLite consensus disorder prediction 833 848 - -
Tsu07g03059 933 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 84 831 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tsu07g03059 933 SUPERFAMILY Ribonuclease PH domain 2-like 229 312 IPR036345 -
Tsu07g03059 933 SMART kh_6 688 753 IPR004087 GO:0003676
Tsu07g03059 933 Gene3D K Homology domain, type 1 686 758 IPR036612 GO:0003723
Tsu07g03059 933 SMART S1_6 757 828 IPR022967 -
Tsu07g03059 933 Gene3D - 405 685 IPR027408 -
Tsu07g03059 933 CDD PNPase_KH 689 749 - -
Tsu07g03059 933 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 622 IPR020568 -
Tsu07g03059 933 SUPERFAMILY Ribonuclease PH domain 2-like 580 684 IPR036345 -
Tsu07g03059 933 Pfam S1 RNA binding domain 766 828 IPR003029 GO:0003676
Tsu07g03059 933 Gene3D - 759 830 IPR012340 -
Tsu07g03059 933 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 72 895 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tsu07g03059 933 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 225 IPR020568 -
Tsu07g03059 933 MobiDBLite consensus disorder prediction 833 933 - -
Tsu07g03059 933 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 419 829 IPR012162 GO:0003723|GO:0004654|GO:0006402
Tsu07g03059 933 Pfam 3' exoribonuclease family, domain 2 230 291 IPR015847 -
Tsu07g03059 933 Pfam 3' exoribonuclease family, domain 2 591 664 IPR015847 -
Tsu07g03059 933 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 72 895 - -
Tsu07g03059 933 Gene3D - 77 310 IPR027408 -
Tsu07g03059 933 Pfam 3' exoribonuclease family, domain 1 95 225 IPR001247 -
Tsu07g03059 933 Pfam 3' exoribonuclease family, domain 1 453 586 IPR001247 -
Tsu07g03059 933 SUPERFAMILY Nucleic acid-binding proteins 757 832 IPR012340 -
Tsu07g03059 933 ProSiteProfiles Type-1 KH domain profile. 689 749 - -
Tsu07g03059 933 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 684 753 IPR036612 GO:0003723
Tsu07g03059 933 MobiDBLite consensus disorder prediction 850 864 - -
Tsu07g03059 933 MobiDBLite consensus disorder prediction 865 881 - -
Tsu07g03059 933 MobiDBLite consensus disorder prediction 911 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03059 Tsu-Chr7 36432513 36456096 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03059 K00962 - gmx:100785430 1323.53