Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03049 ATGGACTTCAATCACTACCTCACCGAGCTTTCAACTTCCATACAATCAATTCCTTCCTCCGACGACTTCCGTTTCAACTACAACATCCCCGAATTCCGTCACCTCATTGAAGAACTCACCAAAAAATCCCAATCAATGTTGAACAAAATCGGTTCCTCCGATCACATTTGGGGCCCAGGTTCATCTTTTCCAGCTGATATTGATGATGCTTATGAATGGATTGTTAATGCAAACGACGACGTTTTGGAACTTGTTAATGAGGTTGTTGATGAATTTCATAGGGTTTTGAAGGAGCAAGATATGGAAGAAGGGAAAGATgggttttttaaaattaagaaagGGAAGAAAGGGATTGGTTATTTTGGTGATGATGGGAATGAAACGAAACCGAAAGTTTCGTTTCATGTTCATACTCTTAGGAAACCTCAGTATCATTATAATCTTGCTGTTGATAATTCGAATCAGCCTTTTGAACATGTTTGGTTGGAGAAAAGTGAAGATGGTGAAAGGTTTATACATCCACTGGAGAAACTCTCTGTTATAGATTTTGTTGATAAAGATATTGAGAATCTTGTACCAGTAAAGCCTCCCCCAATGGAATGCACACCTTTCATGCTTGTGGAGGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTGAGTTCCGTTGATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTTCAAGGTTTGACTTGCTTGATGCAAATATCAACCCGGACTGAAGATTTTATTGTGGATACTCTGAAGCTCCGTGATCATGTTGGGACACACCTGAGGGATGTTTTCAAGGACCCTACTAAGAAAAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGACACTGGCCAGGCTTCAAGGGTGTTAAAAATGGAGAGATATAGTTTGCAACATCTTTTACAACACTTTTGTGGAGTTACAGCAAACAAAGAGTACCAGAATGCAGACTGGAGAGCGCGCCCTCTTCCTGATGTGATGATAAAATATGGAAGAGAAGATACACACTATCTgctttatatatatgatttaatgAGAATCAAGCTATATGAACTGTCTAAGGAGTCTGAAAGTCCCGATGATCCTCTGTTGGAGGTTTACAAGCGGAGTTATAATGTCTGCATGCAGCTGTACGAGAAAGAGCTTTTGACAGAAAACTCCTACCTTAATTTAAAGGGGTTGCGAAGGGCTGGTTTTAATGGTCAGCAGCTTGCCGTTGTTTCAGGGCTTTATGAATGGCGTGATGTTCTTGCTCGGGCAGAGGATGAGAGTACTGGGTATATATTGCCAAATAAAGTTATTCTTGAAATTGCTAAGCATATGCCCGTCACTGCAAGCAATCTACGGCGATTGGTAGCGGAGAGGTCAAGGCTCCCATATGTTGAGCGCAATCATGATATCGTTGTTAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAAGCCGCACTTCGTTTGAAAGAAGAACATGCTGCCTTTGAAGAAGCACTTCGTTTGAAAGAAGAACAGGCAGCGAGTGTGTCAAATGAAGCATCTGTTAAGGATGGAACTGAAGCTCCCCAATCTCATTCCTCAAACTTAAAGGATGAATGTGCAGCAAATGGAAGCATTGGAATTGAAAATGGCACTATTGCCTCTACATTGAAGGAAAATGGAGCAAATGTTCAGGTGCTAAAAATGCCTGCTGGTGCTTGCGAAGGGAATGGTTTTCCTGACAAAAAGGGCAAAGAAGACATCAAGGTAGAACAGATTGGATCATCAGTCAATCTTCCATCATTTTTGGGCAACAATGAGAAGTGTACCATAACAGTTGACTTGGATTCTGACTCCGACGATATAGAGTAA 1923 0.4067 MDFNHYLTELSTSIQSIPSSDDFRFNYNIPEFRHLIEELTKKSQSMLNKIGSSDHIWGPGSSFPADIDDAYEWIVNANDDVLELVNEVVDEFHRVLKEQDMEEGKDGFFKIKKGKKGIGYFGDDGNETKPKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKSEDGERFIHPLEKLSVIDFVDKDIENLVPVKPPPMECTPFMLVEEVKGLKELAAKLSSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGTHLRDVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLYELSKESESPDDPLLEVYKRSYNVCMQLYEKELLTENSYLNLKGLRRAGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILEIAKHMPVTASNLRRLVAERSRLPYVERNHDIVVNIVRHSMQNAAAFEEAALRLKEEHAAFEEALRLKEEQAASVSNEASVKDGTEAPQSHSSNLKDECAANGSIGIENGTIASTLKENGANVQVLKMPAGACEGNGFPDKKGKEDIKVEQIGSSVNLPSFLGNNEKCTITVDLDSDSDDIE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03049 640 ProSiteProfiles HRDC domain profile. 423 505 IPR002121 GO:0003676
Tsu07g03049 640 SMART hrdc7 423 504 IPR002121 GO:0003676
Tsu07g03049 640 Gene3D HRDC domain 409 507 IPR044876 -
Tsu07g03049 640 MobiDBLite consensus disorder prediction 531 555 - -
Tsu07g03049 640 Pfam 3'-5' exonuclease 207 370 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu07g03049 640 Pfam HRDC domain 426 474 IPR002121 GO:0003676
Tsu07g03049 640 PANTHER 3'-5' EXONUCLEASE 1 635 - -
Tsu07g03049 640 CDD Rrp6p_like_exo 200 392 - -
Tsu07g03049 640 SUPERFAMILY HRDC-like 406 501 IPR010997 GO:0000166|GO:0044237
Tsu07g03049 640 SUPERFAMILY Ribonuclease H-like 140 417 IPR012337 -
Tsu07g03049 640 SMART 35exoneu6 204 373 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu07g03049 640 Pfam PMC2NT (NUC016) domain 15 93 IPR012588 GO:0000176|GO:0006396
Tsu07g03049 640 MobiDBLite consensus disorder prediction 530 555 - -
Tsu07g03049 640 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 635 IPR045092 GO:0000175|GO:0000467
Tsu07g03049 640 Coils Coil 502 529 - -
Tsu07g03049 640 Gene3D - 139 408 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03049 Tsu-Chr7 36305875 36316229 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03049 K12591 - gmx:100804872 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03049 07 36305875 36316229 Tsu07g03049 07 36305875 36316229 ECH