Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02957 ATGATCAGAATCAGATCTAAACTATCTGTATTCTCTGTTGTGTTATTACGCATAAGGAAAAACCCATTCACTGTTAATCACTGTGATATAGTTCAGAATCCTCTTATGAGTGTTTCTTTCAATGTTTTTAACTCTTCAAATTTTGACACTTTTTTAGCTCCACCAAAATTTGGTTTCTCAGTCAGTCCCTTTTCTACTGAATCCTCAACCAACTCTATTGCCCCTGCATTAGGATTGGATGAGGTATTGAGTGATGACGACGATAATGAAAATGACGATGACAATGATGATAAGAATAGTACTCAGTTACATTTAAGGGATGAAGGTTTTGTTCAAGATGTTAAGACCATTTTGGATATAATTCACAAACCCGGTTCCGGACCATATGAAATTAAGCAGAAGCTTGAGGATTGCTGTGTTAAGGTATCATCCGAGTTGGTTGTGGAGGTTCTTTCGAGAATTCGCAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCAGGGAAGCAACCTGGGTATGCTCATTCGGTTCGCGAATACCATTCAATGATATCTGTCCTTGGTAAAATGAGGAGGTTTGATACTGCTTGGACCTTAATTGAAGAAATGAGGAGGGGAAGAAATGGTGAATCTATTGTCACCCCACAAACTCTCTTGATTATGATAAGGAAATACTGTGCTGTTCATGATGTTGGAAGGGCTATAAACACTTTCTACGCTTTTAAACGGTTTAATTTTCAAGTTGGATTGTATGAATTTCAAGGGCTTCTTTCTGCGCTTTGCCGGTATAAGAATGTGCAGGATGCTGAGCACTTGCTGTTCTGCAACAAAAATGTTTTCCCACTTGACACCAAAAGCTTTAACATCATTCTTAATGGATGGTGCAATTTGATTGTTAGTACGCGCAATGCAGAAAGGGTTTGGGAGGAGATGAGTAAGAGAGGAATCCGACATGATGTTGTCTCATATGCAAGTATCATATCTTGCTATTCAAAGTCTTCTAAACTTTATAGGGTGCTCCAGCTGTTTGaacaaatgaagaaaatgaatatCACTCCTGATAGGAAGGTTTATAATGCGGTCATTTTTTCGCTTGCGAAGAATAGGCTTGTGAAAGAAGCTGTAAATCTTATTAGAACAATGGAAGACAATAATGTTACTCCAGATGCCATTACTTACAACTCCCTGATCAAGCCTCTGTGCAAAAACCGCAAAATTGTAGAAGCTAAAGAAGTTTTTGTTGAAATGTTGAAGCGACGCATATCCCCGTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAGGAAGAAGTATTTGAGCTTTTGGAAAAAATGAAAGAGCAGGGGTGCAACCCAACTATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGAAGTCAATAAGATATGGAATGCAATGGTGGAAGATGGAATCGGCCATGATCGTAGCTCGTATATTGTACTGATTCATGGCCTTTTTCTGAATTGTAAGGTGGAGGAAGCATACAAATATTATATCGAGATGCAAGAGAAAGGTTTTCTACCGGAACCAAAGACCGAAAGTATGCTTCAGGCATGGCTTTCTGGAAGACAAGTAACAGAGGGCCAGGTAACAGATTTAGAACACAATCAATTGGAACATGGTAGTACTAAAAAGAATGTCAAATCTATACCTAGTAAATTTGATAAGGAAAAAGATTTTCTTCGCGAACCCGAGACCAGAAGCGTAACAAGAGAAGGCGGCTTTTCTTTCTGGGAGAAGTAA 1797 0.3851 MIRIRSKLSVFSVVLLRIRKNPFTVNHCDIVQNPLMSVSFNVFNSSNFDTFLAPPKFGFSVSPFSTESSTNSIAPALGLDEVLSDDDDNENDDDNDDKNSTQLHLRDEGFVQDVKTILDIIHKPGSGPYEIKQKLEDCCVKVSSELVVEVLSRIRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISVLGKMRRFDTAWTLIEEMRRGRNGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSTRNAERVWEEMSKRGIRHDVVSYASIISCYSKSSKLYRVLQLFEQMKKMNITPDRKVYNAVIFSLAKNRLVKEAVNLIRTMEDNNVTPDAITYNSLIKPLCKNRKIVEAKEVFVEMLKRRISPSIRTFHAFFRILRVKEEVFELLEKMKEQGCNPTIETYIMLIRKFCRWRQLDEVNKIWNAMVEDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTESMLQAWLSGRQVTEGQVTDLEHNQLEHGSTKKNVKSIPSKFDKEKDFLREPETRSVTREGGFSFWEK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 460 489 IPR002885 -
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 181 206 IPR002885 -
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Tsu07g02957 598 TIGRFAM PPR: pentatricopeptide repeat domain 495 526 IPR002885 -
Tsu07g02957 598 Gene3D Tetratricopeptide repeat domain 300 439 IPR011990 GO:0005515
Tsu07g02957 598 Gene3D Tetratricopeptide repeat domain 111 279 IPR011990 GO:0005515
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Tsu07g02957 598 Pfam Pentatricopeptide repeat domain 439 466 IPR002885 -
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Tsu07g02957 598 Gene3D Tetratricopeptide repeat domain 440 558 IPR011990 GO:0005515
Tsu07g02957 598 PANTHER OS01G0816000 PROTEIN 59 588 - -
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 319 IPR002885 -
Tsu07g02957 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 59 588 - -
Tsu07g02957 598 Pfam PPR repeat 495 524 IPR002885 -
Tsu07g02957 598 Pfam PPR repeat 181 206 IPR002885 -
Tsu07g02957 598 Pfam PPR repeat 322 352 IPR002885 -
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Tsu07g02957 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Tsu07g02957 598 Pfam PPR repeat family 354 403 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02957 Tsu-Chr7 35049729 35051832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02957 170 534 Glycosyltransferase AT1G05670 27.056 5.38e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02957 - - gmx:100785546 885.945