Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02938 ATGGGCGCAACCAGTGACCCAACCCAAGACACTTCCGACGAACAACAAAAACGCTCCGAGATCTACACCTACGAAGCACCATGGCATATCTACGCCATGAACTGGAGTGTCCGTCGTGACAAAAAATACCGATTAGCCATCGCTTCTCTCTTAGAACAATACCCCAACCGAGTCGAAATCGTTCAACTCGATGACACAAACGGCGAAATCAAATCCGATCCAAATCTCTCCTTCGAACATCCATACCCACCAACCAAAGCAATCTTCATCCCTGACAAAGACTGCCAACGTCCTGACCTCTTAGCTACCTCCAGCGATTTCCTCCGTATTTGGCGGATCTCCGATTCCGATGAATCTCAATCTCGCGGCGTCGAACTCAAGAGTCTTCTTAACGGTAACAAAAACAGTGAGTATTGTGGTCCGATTACTTCATTCGATTGGAATGAAGCTGAACCGCGAAGAATCGGTACTTCGAGTATTGATACTACTTGTACTATTTGGGATATTGAGAAGGAAACTGTTGATACTCAATTGATTGCACATGATAAAGAAGTTTATGATATAGCTTGGGGTGGTGTTGGTGTTTTTGCTTCAGTTTCTGCCGATGGATCCGTTAGGGTTTTTGATTTACGGGATAAAGAACACTCGACGATAATCTACGAAAGTTCTGAAGCTGATACACCGTTAGTTCGGTTGGGTTGGAATAAACAAGATCCTCGTTATATGGCTACAATTATCATGGATACTGCTAAGGTTGTTGTTCTTGATATTCGTTTTCCAACATTACCTGTTGTGGAATTGCAGAGACATCAAGCTAGTGTTAATGCTATTGCCTGGGCACCACATAGTTCTTGTCATATTTGTACTGCTGGTGATGATTCTCAAGCTTTGATTTGGGATCTTTCATCAATGGGTCAACCTGTTGAAGGTGGTCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAAATTGAACAACTTCAATGGTCTTCTTCTCAGCCTGATTGGGTTGCTATTGCTTTTTCAACTAAGCTTCAGATTCTCAGGGTGTGA 1053 0.4321 MGATSDPTQDTSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTNGEIKSDPNLSFEHPYPPTKAIFIPDKDCQRPDLLATSSDFLRIWRISDSDESQSRGVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEADTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02938 350 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Tsu07g02938 350 SUPERFAMILY WD40 repeat-like 54 308 IPR036322 GO:0005515
Tsu07g02938 350 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Tsu07g02938 350 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Tsu07g02938 350 PANTHER WD REPEAT CONTAINING PROTEIN 12 350 IPR045159 -
Tsu07g02938 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 303 - -
Tsu07g02938 350 Gene3D - 9 349 IPR015943 GO:0005515
Tsu07g02938 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 303 IPR001680 GO:0005515
Tsu07g02938 350 SMART WD40_4 123 168 IPR001680 GO:0005515
Tsu07g02938 350 SMART WD40_4 260 300 IPR001680 GO:0005515
Tsu07g02938 350 SMART WD40_4 171 209 IPR001680 GO:0005515
Tsu07g02938 350 SMART WD40_4 71 112 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02938 Tsu-Chr7 34779159 34782211 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02938 K11805 - gmx:100818850 677.552