LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02936	ATGGCTTCGGCTACTTTCTCTGTAGCCAAACCAGTTATTAAGGCAAATGGGAAATGTTTTTCTTCTGAATTCAATGGTCTTAGGAACTCATCAGGATATCTTCACTTATCTAGCAAAACTTCAGATGAGTTCCATTCTGTTGTTTCCTTCCAAACCAATGCAgTTGGTGGAAGCAGTGGAGGATACAAGAAAGCTCTTGTAGTAGAAGCAAAACAATTGAAGGTAGCCATAAATGGATTTGGAAGGATTGGAAGGAACTTCTTGAGATGTTGGCATGGTCGTAAGGATTCACCTCTTGATGTCATTGCCATCAACGACACTGGAGGTGTAAAACAAGCTTCTCACCTTTTGAAATATGATTCCACACTTGGAATCTTTGATGCTGATGTTAAACCTGTTGGCAATGATGGTATCTCTGTTGATGGAAAGGTTATCAAAGTTGTCTCTGACCGTAACCCTGCTAACCTTCCTTGGAAGGAATTGGGGATAGACTTGGTGATTGAAGGAACTGGGGTGTTTGTGGACAGAGAAGGTGCAGGAAGGCACATTACAGCAGGGGCTAAGAAGGTTCTCATCACTGCCCCTGGAAAAGGAGATATCCCAACTTATGTGGTTGGTGTCAATGCTGATGGTTACACCCATGAGGATGACATCATCAGCAATGCTTCTTGCACCACTAACTGCCTTGCTCCCTTTGTCAAGGTCCTTGATCAGAAATTTGGTATCATCAAGGGTACCATGACTACCACTCATTCCTACACTGGTGACCAAAGGCTTCTTGACGCTAGTCACCGTGACCTAAGGCGTGCAAGAGCAGCAGCCCTAAACATTGTCCCAACTTCAACCGGAGCAGCAAAGGCAGTTGCCCTTGTCCTCCCATCACTCAAAGGAAAGCTCAACGGTATTGCACTTCGTGTGCCAACACCAAATGTTTCGGTGGTGGACCTTGTCGTTCAAGTCACAAAGAAGACGTTTGCTGAAGAAGTGAACGAGGCATTCAGAGACAGTGCAGCTAAGGAGTTGAATGGTATTCTCTCAGTTTGTGATGAACCACTTGTGTCTGTAGATTTTAGGTGCACTGATGTGTCCTCAACCGTCGATTCATCGTTGACAATGGTCATGGGAGATGACATGGTGAAGGTGATTGCTTGGTATGACAATGAATGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA	1224	0.4461	MASATFSVAKPVIKANGKCFSSEFNGLRNSSGYLHLSSKTSDEFHSVVSFQTNAVGGSSGGYKKALVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGNDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADGYTHEDDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNEAFRDSAAKELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02936	407	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	74	397	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Tsu07g02936	407	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	74	175	IPR020828	GO:0051287
	Tsu07g02936	407	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	224	386	-	-
	Tsu07g02936	407	SMART	gp_dh_n_7	73	224	IPR020828	GO:0051287
	Tsu07g02936	407	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	182	195	IPR020831	GO:0016620
	Tsu07g02936	407	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	218	236	IPR020831	GO:0016620
	Tsu07g02936	407	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	245	261	IPR020831	GO:0016620
	Tsu07g02936	407	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	301	318	IPR020831	GO:0016620
	Tsu07g02936	407	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	341	356	IPR020831	GO:0016620
	Tsu07g02936	407	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	229	385	IPR020829	GO:0016620
	Tsu07g02936	407	Gene3D	-	74	399	-	-
	Tsu07g02936	407	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	407	IPR020831	GO:0016620
	Tsu07g02936	407	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	222	229	IPR020830	GO:0016620
	Tsu07g02936	407	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	407	-	-
	Tsu07g02936	407	Gene3D	Dihydrodipicolinate Reductase; domain 2	223	387	-	-
	Tsu07g02936	407	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	73	240	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02936	Tsu-Chr7	34769120	34772742	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02936	K05298		-	rcu:8273055	680.633

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g02936	07	34769120	34772742	Tsu07g02936	07	34769120	34772742	ECH