Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02933 ATGGCTTCTTCATTTTGGACcctttgtttgattattttagcATCActaatttcttcttcattcTGTGCTCCTCCAAGGAAGCCAGTAGATGTACCATTTGGTAGAAACTATTACCCTACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTTCCTGGTGATTCAGCTGGAACAGTAACTGCTTTCTATCTATCTTCACAAAATGCTGAACATGATGAAATAGATTTTGAGTTCTTGGGAAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGTCAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCTACAAAAGAGTTTCATAGATACTCCATTCTATGGAACATGTACCAGATTGTGTTTTTTGTGGATGATGTACCAATCAGAGTGTTCAAGAACAGCAAAGATTTAGGAGTAAGATTTCCATTTGACCAACCAATGAAAATCTACAACAGTTTATGGAATGCAGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACTGATTGGTCAAAAGCACCATTCATAGCTGCTTACAAAAGTTTCCACATTGATGGTTGTGAAGCTTCTGTTCAAGCAAAATTCTGTGCTACACAAGGTAAAAGATGGTGGGATCAACCTGAATTTCGCGATCTTGATGCCGCTCAATGGCGTAGATTAAGATGGGTTCGCGAGAAATTCACAATTTACAATTATTGCACTGATAGGAAACGTTTGCCTCAAATTCCTCCTGAATGCAAAAGAGACCGTGacatttaa 885 0.3627 MASSFWTLCLIILASLISSSFCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKSFHIDGCEASVQAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKFTIYNYCTDRKRLPQIPPECKRDRDI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02933 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 221 IPR000757 GO:0004553|GO:0005975
Tsu07g02933 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 292 IPR044791 GO:0004553
Tsu07g02933 294 Gene3D - 19 294 - -
Tsu07g02933 294 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Tsu07g02933 294 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Tsu07g02933 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 292 - -
Tsu07g02933 294 CDD GH16_XET 28 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu07g02933 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 292 IPR013320 -
Tsu07g02933 294 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu07g02933 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02933 Tsu-Chr7 34742090 34744281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02933 7 294 Glycoside Hydrolase AT5G13870 80.208 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02933 K08235 - gmx:547775 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02933 07 34742090 34744281 Tsu07g02933 07 34742090 34744281 ECH