Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02916 ATGGCTTCTCTTTTCTCATCTTCACAACCCATTTCCACACCCCCCTCCATTACCAAACTCACCTCTTACCCAAAAACATTaaacttcttcattttcaactaCCCTTTTCACCATAAAACACCACCCTTTTTCCCTCTCAACGCAGTCCACTCACAAGGACTCTATATCCCTTTTCCACCCTCAAAAACTGACAAAATTGAGCTTGAAAATGACCCTATCTCAGTCCTCAACAAGAGAATTCGTCGCGAATATGCTAAAAAAGAGGTTACAAGGACTGTTATGGACTCTGAAGAAGCTGATAAGTACATAAAAATGGTGAAGGAACAACAGCAGAGGGGGCTTCAGAAGCTTAAAGGTGATAGAGAGAGTAAAGATGGTACCATTAGTTATAAGGTAGACCCTTATTCACTTCGTTCAGGGGACTATGTTGTGCATAGGAAAGTTGGTATTGGAAGGTTTGTCGGGATTAAATTCGATGTTTCGAAGAAAACGAATGAACCTACTGAGTATGTTTTCATTGAGTATGCTGATGGATTGGCAAAGCTTCCTGTTAAACAGGCTTCTAAAATGCTTTATAGATATAGTCTtccaaatgaaaacaaaaagcCTAGGTCATTGAACAAGTTGCATGATACTAGTGCTTGGgagaaaaaaaagactaaaggAAAGGTTGCAATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTTAAACAAAGAAGGCCTCCCTATCCTAGGAGTCCTGCCCTGGCTGAATTCGCAGCGCAATTTACTTATGAACCTACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAGAAAGATCTGACAGAACGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCGTTGCGTGCTATCCAATGTGTTGTCGCAGCTAAAAAACAAGCGATGGTTCTCGCGCCGACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGACTGCTTAGCAGGTTTCAGAACAAATCAGAAAAAGAAGTGTCCTTAGGAATGATTAAGAATGGTGACCTAGATATTATTGTTGGGACTCATGCACTCCTAGGACCTCGTGTTGTTTATAACAATCTTGGCTTGCTTGTGGTTGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAAAGGATTGCTTCTTTTAAAACTTCCGTGGACGTACTTACTTTATCTGCAACCCCTATACCGCGGACTCTTTATTTAGCTTTGACAGGATTTCGTGATGCTAGtTTAATTTCAACTCCACCGCCAGAAAGAGTTCCTATCAAGACTCAGCTTTCATCATTCAGTAAGGAGAAAGTAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTATGCCACGTATTAAAGGGCTTGAAGAAGCAACGGAATTTCTTGAAGAGGCATTCCCCGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATTCTCAAAGCAATTAGAGGATTCCATGGAGAAGTTTGCTCAAGGTGAAATAAAAATCCTTATCAGTACAAATATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGAGTTGGGCGGGCAGACAAGGAAGCTTATGCATACTTATTTTATCCTGACAAGAATGTGCTCTCTGATCAAGCAGCGGAGAGACTTGGAGCCCTTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGATATGGGTATAAGAGGTTTTGGTACTATTTTTGGCGAGCAACAAACTGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGCTTATCCAAGGTTGAAGATCACCGTGTTGTATCCGTTCCTTATCACTCAGTGCAGGTTGACTTAAATATCAATCCTCATCTTCCGTCagaatacataaataatttCGAGAACCCTATGGAAATAATAAATGAAGCTGAGCGAAACGCTGAGAAAGACATTTGGAGTCTGATGCAATTTACAGAGAATTTTCGCCGCCAATATGGCAAAGAGCCTCACCCGATGGAGATTATCTTAAAGAAGCTTTACTTGAGGAGAATGGCAGCTGATATAGGGGTAACCAGAATTTACTCTTCAGGGAAGATGGTGTTTATGAAAACAAACATGAgtaaaaaggttttcaaaattATGCTAGAGTCGATGACAACAGATACATATAAAGATTCATTAGCTCTTGAGGGGGATCAAATTAAGGCTGAACTTCTATTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTAATTGCATGGCTGAACTTCATGCTTCACTAGCATCACTCATAAAGTACTAG 2457 0.3932 MASLFSSSQPISTPPSITKLTSYPKTLNFFIFNYPFHHKTPPFFPLNAVHSQGLYIPFPPSKTDKIELENDPISVLNKRIRREYAKKEVTRTVMDSEEADKYIKMVKEQQQRGLQKLKGDRESKDGTISYKVDPYSLRSGDYVVHRKVGIGRFVGIKFDVSKKTNEPTEYVFIEYADGLAKLPVKQASKMLYRYSLPNENKKPRSLNKLHDTSAWEKKKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPRSPALAEFAAQFTYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIQCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQNKSEKEVSLGMIKNGDLDIIVGTHALLGPRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKEKVISAIKYELDRGGQVFYVMPRIKGLEEATEFLEEAFPDVEIAVAHGKQFSKQLEDSMEKFAQGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKNVLSDQAAERLGALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINNFENPMEIINEAERNAEKDIWSLMQFTENFRRQYGKEPHPMEIILKKLYLRRMAADIGVTRIYSSGKMVFMKTNMSKKVFKIMLESMTTDTYKDSLALEGDQIKAELLLELPKEQLLNWIFNCMAELHASLASLIKY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02916 818 SMART helicmild6 489 573 IPR001650 -
Tsu07g02916 818 Gene3D - 664 812 IPR037235 -
Tsu07g02916 818 Pfam Helicase conserved C-terminal domain 466 572 IPR001650 -
Tsu07g02916 818 Pfam DEAD/DEAH box helicase 287 425 IPR011545 GO:0003676|GO:0005524
Tsu07g02916 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 617 IPR001650 -
Tsu07g02916 818 Gene3D - 140 200 - -
Tsu07g02916 818 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 61 789 - -
Tsu07g02916 818 SMART ultradead3 261 453 IPR014001 -
Tsu07g02916 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 587 IPR027417 -
Tsu07g02916 818 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 61 789 - -
Tsu07g02916 818 SUPERFAMILY CarD-like 132 200 IPR036101 -
Tsu07g02916 818 Gene3D - 136 651 IPR027417 -
Tsu07g02916 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 442 IPR014001 -
Tsu07g02916 818 Gene3D - 201 444 IPR027417 -
Tsu07g02916 818 SUPERFAMILY TRCF domain-like 661 808 IPR037235 -
Tsu07g02916 818 CDD DEXHc_TRCF 251 444 - -
Tsu07g02916 818 SMART CarD_TRCF_2 136 238 IPR003711 -
Tsu07g02916 818 Pfam CarD-like/TRCF domain 137 237 IPR003711 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02916 Tsu-Chr7 34567937 34574303 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02916 - - gmx:100791900 1308.12