Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02867 ATGAATTACATAAAACCATGTACGAGGAAAATCAACAATCTTGTCACATTAACTGCTCCAAAACCTCACATTCACGTCGATGCTTCCATCGTCAAAACAGGCTTCGATCCCAACACATACCGTTCCAATTTCCTTGTCAACACTTTTCTTCAACGTGGGGATTTGATCGGTGCCCGCAAACTGTTCGATGAAATACCTCACAAGAACATATTCTCCACTAACACCATGATCATGGGTTATATCAAATCTGGCAATCATTCTGAAGCTAGAACCTTGTTTGATTCTATGTTTGAACGCACTGCTGTTACGTGGACAATGTTGATTGGTGGCTATGCTCAAAATAATCGATTCCGTGAGGCTTTTGGCCTTTTTGTTGAAATGGGTAGGCATGGGATTGGTTTGGATCATGTTAGTTTGGCCACTTTGTTGTCTGGGTTTACTGAGTTTGATTCTGTTAATGAAGTGAAACAGGTTCATGCTAATGTTGTTAAATTGGGATATGATTCGACGCTTGTGGTTTCTAACTCGTTGCTTGATTCTTATTGTAAGACTCGCAATCTTGGATTAGCTTGTCGCCTGTTCAGTGATATACCTGAGAGAAATTCTGTTACTTTTAATGCATTGTTGACGGGATACTCGAAAGAAGGGTTTAATCATGAAGCTATTAACCTGTTTTTTAAGATGCAAGAAGTGGGGTATATACCGACAGAATTTACCTTTGCTGCGATTTTAACAGCAGGTATACAGTTGGATGATATAGAATTCGGGCAACAAGTTCACGGTTTTGTAGTGAAGTGTAACTTTGTTTGGGATGTGTTTGTGACTAATGCTTTGCTTGATTTTTACTCGAAGCATGACCGTCTTGTTGAAGCCAGGAAGCTTTTTTATGAGATGCCTGAAGTGGATGGTATCTCTTACAATGTACTTGTCACGTGTTATGCGTGGAATGGAAGAATGAAAGAATCTCTTGAACTATTCAGGGAATTACAGTTCACTGGATTTGACAGGAGACAATTCCCATTTGCTACCTTGTTGAGCATAGCTGCAATTTCTTTTAACTTGGATATGGGTAGACAAATTCATTCCCAGGCTATTGTGACGGATGCGATTTCAGAAATCCTCGTAGGGAATTCAGTGGTTGACATGTATGCTAAATGTGGCAAATTTGAAGAAGCAAATAGGGTTTTTGCAGATCTCGCTCATCAAAGTTCAGTTGCATGGACAGCCATGATCTCGGCTTATGTCCAAAAGGGGCTTCATGAAGATGGTCTGAAGTTATTCATTGAGATGCAAAGAGCTAAAATCAATGCTGATGCAGCCACTTATGCCAGCACTGTAAGAGCATGTGCAAGCTTAGCTTCATTGACACTAGGAAAGCAGTTACACTCACATATAATCGGATCGGGATATATTGCAAATGTATTTTCTGGGAGTGCACTAGTTGACATGTATGCAAAATGTGGATCCATAAAAGATGCACTTCAAATGTTTCAAGAGATGCCAGTAAGAAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGGCCGCACCCTTAGATTGTTTGAAGAAATGGTTCGTTCGGGTTTGCAGCCAGATTCTGTTAGTCTCCTTAGCCTTCTGTATGCTTGCAGTCACTGTGGTCTAGTTGAAGAAGGCTTACAGTACTTCAACTCCATGACTCAAATTTATAAACTTGTTCCTAAGAAAGAGCATTACGCATCGGTAGTTGATATGTTATGTCGTGGTAAAAGATTTGACGAGGCGGAGAAATTGATGGCTCAAATGCCTTTTCAACCTGATGAAATAATGTGGTCATCTGTTCTCAATTCATGCAGAATCCATAAAAATCaagagttagcaaagaaagcagCAGACCAACTATTCAATATGAAGGTACTGAGAGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGAAGCTGGTGAATGGGACAATGTAGGGAAGGTGAAGAAAGACATGCGAGACAGAGGAGTGAAGAAAGTGCCGGCTTATAGTTGGGTcgaaatcaaacacaaaactcATGTTTTCACAGCCAATGACAAGTCTCATCCACAAATGAGAGATATAATGAAGAAGCTTGACGAGTTGGAAGAGAAAATGGTGAAACAGGGGTATAAACCAGACTCAAGTTGTGCCCTTCACAATGTGGATGAGGAAGTGAAAGTAGAATCTCTCAAATATCACAGTGAACGCATTGCCATTGCCTTTGCACTAATTAGCACCCCAAAAGGATCACCTATATTGGTATTGAAGAACCTGAGAGCTTGTATTGATTGTCATGCCGCCATCAAGGTGATCTCCAAGATCGTTGATCGAGAAATCACAGTTAGGGATACAAGTAGGTTCCATCATTTCAAGGATGGGTTTTGCTCGTGTAGAGACTACTGGTAG 2439 0.3993 MNYIKPCTRKINNLVTLTAPKPHIHVDASIVKTGFDPNTYRSNFLVNTFLQRGDLIGARKLFDEIPHKNIFSTNTMIMGYIKSGNHSEARTLFDSMFERTAVTWTMLIGGYAQNNRFREAFGLFVEMGRHGIGLDHVSLATLLSGFTEFDSVNEVKQVHANVVKLGYDSTLVVSNSLLDSYCKTRNLGLACRLFSDIPERNSVTFNALLTGYSKEGFNHEAINLFFKMQEVGYIPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWDVFVTNALLDFYSKHDRLVEARKLFYEMPEVDGISYNVLVTCYAWNGRMKESLELFRELQFTGFDRRQFPFATLLSIAAISFNLDMGRQIHSQAIVTDAISEILVGNSVVDMYAKCGKFEEANRVFADLAHQSSVAWTAMISAYVQKGLHEDGLKLFIEMQRAKINADAATYASTVRACASLASLTLGKQLHSHIIGSGYIANVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGGRTLRLFEEMVRSGLQPDSVSLLSLLYACSHCGLVEEGLQYFNSMTQIYKLVPKKEHYASVVDMLCRGKRFDEAEKLMAQMPFQPDEIMWSSVLNSCRIHKNQELAKKAADQLFNMKVLRDAAPYVSMSNIYAEAGEWDNVGKVKKDMRDRGVKKVPAYSWVEIKHKTHVFTANDKSHPQMRDIMKKLDELEEKMVKQGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVLKNLRACIDCHAAIKVISKIVDREITVRDTSRFHHFKDGFCSCRDYW 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 571 749 IPR011990 GO:0005515
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 454 570 IPR011990 GO:0005515
Tsu07g02867 812 PANTHER - 338 430 - -
Tsu07g02867 812 PANTHER - 24 335 - -
Tsu07g02867 812 PANTHER - 433 755 - -
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 7 98 IPR011990 GO:0005515
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 579 602 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 276 300 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 73 98 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 506 540 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 102 135 IPR002885 -
Tsu07g02867 812 TIGRFAM PPR: pentatricopeptide repeat domain 479 503 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 478 503 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 276 300 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 304 330 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 72 99 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 579 602 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat 377 397 IPR002885 -
Tsu07g02867 812 PANTHER OS01G0913400 PROTEIN-RELATED 338 430 - -
Tsu07g02867 812 PANTHER OS01G0913400 PROTEIN-RELATED 24 335 - -
Tsu07g02867 812 PANTHER OS01G0913400 PROTEIN-RELATED 433 755 - -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 503 IPR002885 -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Tsu07g02867 812 Pfam E motif 621 684 IPR046848 -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 108 251 IPR011990 GO:0005515
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 252 368 IPR011990 GO:0005515
Tsu07g02867 812 Pfam PPR repeat family 504 550 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat family 201 245 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat family 403 450 IPR002885 -
Tsu07g02867 812 Pfam PPR repeat family 101 146 IPR002885 -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Tsu07g02867 812 Pfam E+ motif 689 716 IPR046849 -
Tsu07g02867 812 Pfam DYW family of nucleic acid deaminases 720 812 IPR032867 GO:0008270
Tsu07g02867 812 Gene3D Tetratricopeptide repeat domain 369 453 IPR011990 GO:0005515
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 99 IPR002885 -
Tsu07g02867 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02867 Tsu-Chr7 33818371 33820899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02867 53 812 Glycoside Hydrolase AT3G49170 34.194 9.68e-154 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02867 - - gmx:100793014 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02867 07 33818371 33820899 Tsu07g02867 07 33818371 33820899 ECH