Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02688 atgacATACTATCTAGCTGATGGTATCTACGGTTCTTATCCAACTTTCGTCAAATCTATTAGACTTCCTCAAAGTGAACCGGATAAGTTATTTACAAAACATCAGGAGGGATGTCGGAAGGACATCGAACGTGCATTTGGAGTACTTCAAGCTCGATTTAAAATCATCCGTGAACTAGCTCGCTTGTGGGACATAGCCGATCTAACCCCCACTCGAGAAGTAGAAGAAACAACAAAGGATCTGTCCTCTCTGCTTTTCCCTCGCACCATTCACTCCTCACCGCCAGCCATGTCTCAGGTTGATAACAGAAATTCTTCAGCTGTTAAGCGTGCCAGGACTGATGGTAGTCGCAGGGAAGATGATTGGACATGTCCCAGCTGTGGTAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCCGCTGATCATAATTCGAAACCTGCTGTCAAGCCTCTTCAAGCTCCACAGGCCTATTCAGCTGCAGCTCCTTATTTAGGCGCCAATCCCCCCCCCTCAATATATCTTGGTGTCCCACCATACGGTCCGTCTTTATTCAATGGATCACCTGTTCCTCCCTATGAGGTTCCATTTTCTGGAGGATCAGCCTATCACTACAATTATGGAGGTCGCCTTTCTGCTGGCAGTCCGTATAGACCATTGCATCTATCGGCACCAGCACCATACACAAGTGGATCCATGGTGGGAAACGGTGGGATCTATGCCATGCCTCAGTTATTGGATCGCTATGGCCTCGGTGTCCCTATTGGACCTGGAGCAATGCAGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGAGCAGATTCAACTCGTGACAATGATTGGGCATGTCCAAAATGTGGCAACGTCAATTTCTCATTTAGAACTGTTTGCAACATGAGAAAGTGTAACACTCCCAAGCCTGGATCCCAGGCCTCAAAGTCTGACAAGAACTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCGTTCCGGACAAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGATTCGGAAAAATCTCCCTCATCATCTCCAGATCAAAATGATCAGTGA 1149 0.4656 MTYYLADGIYGSYPTFVKSIRLPQSEPDKLFTKHQEGCRKDIERAFGVLQARFKIIRELARLWDIADLTPTREVEETTKDLSSLLFPRTIHSSPPAMSQVDNRNSSAVKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKPAVKPLQAPQAYSAAAPYLGANPPPSIYLGVPPYGPSLFNGSPVPPYEVPFSGGSAYHYNYGGRLSAGSPYRPLHLSAPAPYTSGSMVGNGGIYAMPQLLDRYGLGVPIGPGAMQGTRPGFFRDDKSQKKGADSTRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSSSPDQNDQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02688 382 MobiDBLite consensus disorder prediction 361 382 - -
Tsu07g02688 382 SUPERFAMILY Ran binding protein zinc finger-like 330 368 IPR036443 -
Tsu07g02688 382 MobiDBLite consensus disorder prediction 276 291 - -
Tsu07g02688 382 SUPERFAMILY Ran binding protein zinc finger-like 113 150 IPR036443 -
Tsu07g02688 382 Pfam Plant transposon protein 1 69 IPR006912 -
Tsu07g02688 382 Gene3D - 325 368 - -
Tsu07g02688 382 Gene3D - 283 322 - -
Tsu07g02688 382 Gene3D - 110 150 - -
Tsu07g02688 382 PANTHER OS08G0521400 PROTEIN 101 373 - -
Tsu07g02688 382 MobiDBLite consensus disorder prediction 317 339 - -
Tsu07g02688 382 SMART zf_4 292 318 IPR001876 -
Tsu07g02688 382 SMART zf_4 338 364 IPR001876 -
Tsu07g02688 382 SMART zf_4 120 146 IPR001876 -
Tsu07g02688 382 MobiDBLite consensus disorder prediction 269 291 - -
Tsu07g02688 382 Pfam Zn-finger in Ran binding protein and others 291 320 IPR001876 -
Tsu07g02688 382 Pfam Zn-finger in Ran binding protein and others 118 140 IPR001876 -
Tsu07g02688 382 Pfam Zn-finger in Ran binding protein and others 336 366 IPR001876 -
Tsu07g02688 382 SUPERFAMILY Ran binding protein zinc finger-like 285 322 IPR036443 -
Tsu07g02688 382 PANTHER ZINC FINGER PROTEIN 101 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02688 Tsu-Chr7 31474442 31479224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02688 277 369 EF-hand Containing Proteins AT1G55040 33.333 4.69e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02688 - - gmx:100796535 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02688 07 31474442 31479224 Tsu07g02688 07 31474442 31479224 ECH