Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02588 ATGGCGAAGAAAGTAAAAAAGAAGAGTCGAAGTTTCGTTAAGGAGCAAGGGGTTGCTGTCAATTCGTTGCCGAAAACTGTTACTGAATTGGACAGCCCAACTATTCAGTCTGTTGATGAGGGGGTTTCAGTTGCAAAAGCGACAAATCCTTGCCCTCATCTTGTTAAAGGTGTTAATTTAGAAATATTGTCTCGTAAGATTGAGTCTTCTAGGTCCACAAGTTGTCAAGATTGTAGGGAAGGGGCGGCCGATAGGAGGGGCGGTAAAGGAAGAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCGTTAGACTCCAAATCTGATTCGAAGTCTATATGGGTTTGTTTGGAATGTGGCCACTATAATTGTGGAGGTGTGGGACTACCAACAACCCCTCAATGTCATGCTGTTGGGCATGCAAGGAAAACACGGCATCCATTAATGGTTAATATTGAAAAACCTCAACTTTGTTGGTGTTTTCGTTGCAATATGCTTATTCAAgttgataaaattgaaaaaactgaTGAATCAAGTCATCCTATATCTGATGTTGTGAAATTGCTAAAAGAACGATCTTCGGTAAAATTGTTAGTGGATACTGAGGATGTTTCCATTGGGGGTGGCAGTGTTACTGCAGAAATTAAGTCAGGATCTCCGTCTATAAGTGATTCATATGGAAAACGTGGTTATGTAGTTCGAGGCATGGTTAATCTTGGGAatacttgtttctttaattCAATCATGCAAAATCTGCTTGCTATGAATAAATTGCGGGACAATTTTCTTAAGATCGATGCTCCTGTTGGGCCACTGATTAGTTCGTTGAAGAAGTTGTTCACTGAAACAAACCCAGAATCAGGAttgaaaaatagtataaatcCGAGATCCTTTTTTGGCAGTGTATGTTCTAAGTCGCCCCAATTCCGAGGATATCAGCAACATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAGCTGGCTGGAATGAAGCAGAATGGTTCTCTTAAGACTGACGGAACCTCTTCCAATACTTCAGTCGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCAACGAATGTAAGCATTCTTCAACAGTGTATGAACCTTTTTTAGATCTTTCCCTTCCCGTTCCAACTAAGAAGCCTCCGCCTCGGAAGGCTCAACAAGTATCCAGAGCCAAAAAGACAAAACTTCCACCCAAAAAAGGAGGAAAGACTCAGACTCGAGTCAAACTTAACAGGGATTCTGATCCCTTACCCGTTCGAAATGTACCAGGCCAATCATTCAGCCATGAATCATCCTGTCCTGACCAGTCTGTCATATCAGTTTCTGGAGAAATGGCTGCTTCTTCTAGTAATTCTACGGTATTAGATTCTGAAGAAATAAGCAGCGTGGCTAATAAAGAGGACATCTCTCCACCTAATTTGGTTACTGTTGAAGAGTCTCAACAAATGCAAGTGGTTGACAGTGTTGCAAATAAAATATCAGATTCATCAGATGATTTTGGTTGGTTGGATTATGTGGGAGCTGAAACCATGATAGACGAAGAGTCTCAACAAATGCAAGTGGTTGACAGTGTTGCAAATAAAATATCGGATTCATCAGATGATTTTGCTTGGTTGGATTATGTGGGAGCTGAAACCATGATAGATGAAGATGCTTCCGTATCCCAGAAAGAAGATGCACCGGAGGTACAAAATTCTGATATCAAGGATGAACGTTTGACTGTATTCACTGAACAAGCTAGTTATGAAACCATGATAGACGAAGATGCTTCCGTATCCCAGAAGGAAGATGCACCGGAGGTACAAAATTCTGAGATCAAGGATGAACGTTTGACTGTATTCACTGAACAAGCTAGTTGTGAAACCAGCCGTCCTGATTGTTTCCTTCAGGAGGATCAAAACCTAAGACCTAATTTTTCTTCAGCAAATGGGTTGGAAGATGAGGTTCCTTTACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATATAAACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAAAAAGTTCCTCTCCCGGGGATATCATTGAAAGAGATGCCGAGGCCTCCTCGTCTGTTTTGGGTGGTGGTCCAGAAGAATCGGAGTTTGATGGCTTTGGTGGCTTATTTACTGAGCCTGAAGTTTTTGCTGGGCCTGCTCCCAGACCTTCCTCATCTGGTGATGTGGATGCTGGCATTATCATTAGAAACAATAGTGAATCTGATCCAGATGAAGTAGATGATACAGATTCTCCGGTTTCTGTAGAGAGTTGCTTAGCTCATTTTATAAAACCCGAGCTTCTTTCAGATGATAATGCTTGGCATTGTGAAAACTGTTCAAAAATCCTCCGACTTCAAAAGAAGAAAGCAAAACAGCAGGCAAGAACTCTATCTGATGGAAATGCGAGTGGTAGTCAGGATGAATCACGGCATGCATCTAATTTTGAAGTCAGTAGTACAGGAAATGGAGATATTAAAAATGACCAGAGTATAGAAAGTTCAATTTCGCATGTTCAACATGGCACAGAGCTTGAAAACAGTCAAACAGATGAGCTGCCGAATGATGAATTACAGTCTTCATGTTTACAACAAGCTTGCAATGAAGAAAGCTGCAATAATTCAGCTTCTGATTCTTGTATTACTGGTAATGTCCAACAAGATGCTCCAATATTAGATAATGATGACAAAGACTCGGAAGAATGCAGCGACAAAGAGACCGACTTAGAAAGCATGAGAGTGAATAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCTCGTGGCCGCTTAAGTAAATTAAATGGTCATGTCAACTTCAGAGAAACAATGGATTTTAGACCATATATGGATCCCAGGTGTATAAATGAAGAGACGTATGAATACCAGTTGGTTGGTGTAGTGGAGCACTCAGGAACCATGAGGGGTGGTCACTATGTTGCCTATGTGAGAGGAGGGCAGAAGAACAGAGAGAAGGTTGataagaaagaaaatgagagtTCCACATGGTATCACGCGAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGCGAGGCATACATTTTGTTTTATGAAAGAAATTGA 3186 0.4052 MAKKVKKKSRSFVKEQGVAVNSLPKTVTELDSPTIQSVDEGVSVAKATNPCPHLVKGVNLEILSRKIESSRSTSCQDCREGAADRRGGKGRGKHGKKKGGASLDSKSDSKSIWVCLECGHYNCGGVGLPTTPQCHAVGHARKTRHPLMVNIEKPQLCWCFRCNMLIQVDKIEKTDESSHPISDVVKLLKERSSVKLLVDTEDVSIGGGSVTAEIKSGSPSISDSYGKRGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNFLKIDAPVGPLISSLKKLFTETNPESGLKNSINPRSFFGSVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGMKQNGSLKTDGTSSNTSVDALFGGQISSTVCCNECKHSSTVYEPFLDLSLPVPTKKPPPRKAQQVSRAKKTKLPPKKGGKTQTRVKLNRDSDPLPVRNVPGQSFSHESSCPDQSVISVSGEMAASSSNSTVLDSEEISSVANKEDISPPNLVTVEESQQMQVVDSVANKISDSSDDFGWLDYVGAETMIDEESQQMQVVDSVANKISDSSDDFAWLDYVGAETMIDEDASVSQKEDAPEVQNSDIKDERLTVFTEQASYETMIDEDASVSQKEDAPEVQNSEIKDERLTVFTEQASCETSRPDCFLQEDQNLRPNFSSANGLEDEVPLQVQNSEVLLLPYKQVQNSEVLLLPYKEKSSSPGDIIERDAEASSSVLGGGPEESEFDGFGGLFTEPEVFAGPAPRPSSSGDVDAGIIIRNNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDDNAWHCENCSKILRLQKKKAKQQARTLSDGNASGSQDESRHASNFEVSSTGNGDIKNDQSIESSISHVQHGTELENSQTDELPNDELQSSCLQQACNEESCNNSASDSCITGNVQQDAPILDNDDKDSEECSDKETDLESMRVNRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDFRPYMDPRCINEETYEYQLVGVVEHSGTMRGGHYVAYVRGGQKNREKVDKKENESSTWYHASDAYVREVSLDEVLRCEAYILFYERN 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 703 746 - -
Tsu07g02588 1061 ProSiteProfiles Zinc finger UBP-type profile. 49 185 IPR001607 GO:0008270
Tsu07g02588 1061 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 1061 IPR028889 -
Tsu07g02588 1061 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 1060 - -
Tsu07g02588 1061 SUPERFAMILY Cysteine proteinases 232 1060 IPR038765 -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 852 871 - -
Tsu07g02588 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 186 IPR013083 -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 905 923 - -
Tsu07g02588 1061 CDD Peptidase_C19K 871 1059 - -
Tsu07g02588 1061 Pfam Ubiquitin carboxyl-terminal hydrolase 234 1058 IPR001394 GO:0004843|GO:0016579
Tsu07g02588 1061 Gene3D Cysteine proteinases 734 814 - -
Tsu07g02588 1061 Gene3D Cysteine proteinases 815 1061 - -
Tsu07g02588 1061 SUPERFAMILY RING/U-box 50 167 - -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 808 843 - -
Tsu07g02588 1061 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 991 1008 IPR018200 GO:0004843|GO:0006511
Tsu07g02588 1061 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 168 IPR001607 GO:0008270
Tsu07g02588 1061 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 1060 - -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 396 413 - -
Tsu07g02588 1061 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 384 419 - -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 78 106 - -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 902 923 - -
Tsu07g02588 1061 MobiDBLite consensus disorder prediction 810 843 - -
Tsu07g02588 1061 Gene3D Cysteine proteinases 219 418 - -
Tsu07g02588 1061 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02588 Tsu-Chr7 29917079 29920856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02588 932 1060 Miscellaneous Gene Families AT2G24640 37.121 1.84e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02588 K11844 - gmx:100780952 1284.24