Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02582 ATGAGTATACCATCATATTCTGTGGCAGCTAAGCCTTCCACCATTAGGACTAATAGGAAACCATGTTGTAGAAGGTATAATGTTATTGTAAGATCAGAATTAACCATGGTTCCAAAACTTAGAACAACTACCTTGTTTCCACAGTTGTCAAATCAAGGAGTTTCTGTTGCTGATTTACATGTACAAGAAGTTGTTGAAAAACAGTCTCAAACTATCAATTTTGACACTCTATGTTCTAATTTTAAGCCACAGTTTGAGCCTAGTTTTCTCAAGGATGCCTATGAAATGTGTAGAAACATTTGTGCAGAATATGCCAAGACATTCTATCTAGGAACTTTGCTTATGACTGAAGAAAGACAGAAGGCTATATGGGCTATATATGTTTGGTGCAGAAGGACAGATGAGCTGGTTGATGGTCCTAATGCCGACTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATAGATTGGATGACATTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTTACTGATACAGTTTCCAAGTTTCCCTTAGATATTAAGCCTTTTAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAACGCGATACAAAAATTTCGAAGAATTATATCTTTACTGCTACTATGTGGCCGGAACCGTTGGATTGATGAGTGTTCCAGTAATGGGAATCGCCCCAGAGTCCCTCATCCCTGCTCAAAGTGTTTATAACTCAGCATTATATCTTGGTATTGGAAATCAACTCACAAACATTCTTAGAGATGTTGGCGAGGATGCTTTAAGAGGTAGAGTGTACCTTCCACAAGATGAACTTGGCGAGTTTGGTTTATGTGACAAGGATGTTTTCTCAAGAAAGGTGAGTGAAAGATGGAAAGAGTTTATGAAACAGCAGATTGCAAGGGCAAGATTCTACTTCAACTCTGCAGAAGAAGGAGCATCTCACCTTGACAAGGCCAGCCGCTGGCCAGTTTGGTCGTCATTAATATTGTATCGAAAAATCTTAGATGCAATTGAAGACAACGATTATGATAATTTAACAAAACGAGCATATGTAGGACGAACTGAGAAGTTTGTGTCGTTGCCTGCAGCTTATTCTAAATCTCTCTCAATTCCCAAAACGGAATCGCATCCTTCCTTCACAAGGCTTATGTAA 1170 0.3915 MSIPSYSVAAKPSTIRTNRKPCCRRYNVIVRSELTMVPKLRTTTLFPQLSNQGVSVADLHVQEVVEKQSQTINFDTLCSNFKPQFEPSFLKDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEDRLDDIFNGHPYDMLDAALTDTVSKFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYNSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELGEFGLCDKDVFSRKVSERWKEFMKQQIARARFYFNSAEEGASHLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYSKSLSIPKTESHPSFTRLM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02582 389 CDD Trans_IPPS_HH 95 362 IPR033904 GO:0004311
Tsu07g02582 389 Gene3D Farnesyl Diphosphate Synthase 87 369 IPR008949 -
Tsu07g02582 389 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 7 379 - -
Tsu07g02582 389 ProSitePatterns Squalene and phytoene synthases signature 1. 212 227 IPR019845 GO:0016765
Tsu07g02582 389 ProSitePatterns Squalene and phytoene synthases signature 2. 248 273 IPR019845 GO:0016765
Tsu07g02582 389 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 7 379 - -
Tsu07g02582 389 SUPERFAMILY Terpenoid synthases 92 374 IPR008949 -
Tsu07g02582 389 Pfam Squalene/phytoene synthase 104 359 IPR002060 GO:0009058
Tsu07g02582 389 SFLD Phytoene synthase like 91 372 IPR044843 GO:0004311
Tsu07g02582 389 SFLD Isoprenoid Synthase Type I 91 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02582 Tsu-Chr7 29851770 29853979 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02582 K02291 - gmx:100782394 593.578