Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02571 ATGACTGCAAAGTTTGATTGGACATCTGCTTCCGAACCTCACAAGATGTCTGGAGCTACATCCACAGCATCTTCTAGTAGCCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTTATCCCCAAAAACAAGCTATTAGGATCGTTGGTCCCTATTTTGCGAGGGGCTAAAAAGGATGGGGTCACTGGAGTAATCAATGAAGAAAGTCCAAAACAAATTGAGAGGAAATCAAAATGGGGGCCTGATCTGACACAGGATGCATCTGTCAAGAGGGCAAAGGTTTTGGCTTTGCAGATTCGAGTGGACCAAATTTCGAAGCAGTTGGAATCAGAAAATCCAGAGGTTGGGGACTCTCAAAACTCACCATTGGTGGATGAGAACCTAGATGAAAGCAAGTCTGGCTCTCAAACTAATAGCAAGAAGTCAGAAATGCTCGAACTTGAAAAACGGGAAGCAATAGGTGAAATACTAATATTGGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAGTCTTCCTTTGCCTGTTCAAGAATATCCTGGGTACAAATTTGTTAGTCTAATATATGGGCCTGAAGGTGATAATCAAAAGCGACTAGAGAAGGAAACCGGTACCAAGATAAAAATTCATGGAACCAAAGCAGACACAGAGGAGAAAGGTGAAATTAAACCAGGTACTGATGTCCAGTGCAGTTACAAAGAGATGCACGTTAAAATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACTGGGAATTCGGCTGCTGATTCCACACCTGTATCTGTTTCTGGGGACAACACTAATGTTCCAAATCAAAACCAAGACGCCCCCCCATCTCACGCAATTTCTCTATCTCAGGAAAACCAGGCTGTGTTTCAACCAGCAGCCAATACACAAATGCAAGGAGATCACTTTCAATACTCTGGCTCATGGTTTTCAGCCGTTCAATCTCATACCCCTCTATTTGCTTCTTCTGGCAGCGTAGTCCCTCCAAATCCACTGCACCTTGCTAGAAATCCCCATTTCCTACCACAAAGAATGAGCCCTTCAAGACAGCGGCCCAACGCAGACTACTATCAAGTGGTTCCCAGACCAAACAATCAAGCTACTAGTCAGGGTGGTTCACAAGAACCACCTTCTGGTCCACGGCCGCCACCATTTGGATTTTCTGTACCTGATCAGCCTCTTCAAGGTTTTCAAAGGACACAAGTCTCCAACCAGGTGGATCCAACTCAAGCTTATGGCTCTGCTGCTCCTTTTGGGGGAAGACCGGGTTCTGTCTCAATTCCACCCAGACACCCTGCTTTTCCCTATGCTGGTCAACCTTCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTTCCCCTCAAATGCCAAACTTACCGAGTCCTGGTGCCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAACATGGCCAGATATCCCGATGCCTCTGAATCAGAAGTTTGGCAACAATCCCTCCTTGGCGTCCAATAAGCCAGCATATTCTGCTGACCAAATTTATGATCCCTTTTCACCAACATCTGTTGCACCTCCACACCAGAAAGGTAATCCTGGAAAATGA 1665 0.448 MTAKFDWTSASEPHKMSGATSTASSSSQKLSKFGAKSGFVIPKNKLLGSLVPILRGAKKDGVTGVINEESPKQIERKSKWGPDLTQDASVKRAKVLALQIRVDQISKQLESENPEVGDSQNSPLVDENLDESKSGSQTNSKKSEMLELEKREAIGEILILDPSYKPPPGFKPLLKEDSLPLPVQEYPGYKFVSLIYGPEGDNQKRLEKETGTKIKIHGTKADTEEKGEIKPGTDVQCSYKEMHVKISADSFDKVDAAISIIELLISSVTGNSAADSTPVSVSGDNTNVPNQNQDAPPSHAISLSQENQAVFQPAANTQMQGDHFQYSGSWFSAVQSHTPLFASSGSVVPPNPLHLARNPHFLPQRMSPSRQRPNADYYQVVPRPNNQATSQGGSQEPPSGPRPPPFGFSVPDQPLQGFQRTQVSNQVDPTQAYGSAAPFGGRPGSVSIPPRHPAFPYAGQPSPRSQVPQMGMRNFIPSPQMPNLPSPGAQRGMHNRQSYPAQGTWPDIPMPLNQKFGNNPSLASNKPAYSADQIYDPFSPTSVAPPHQKGNPGK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02571 554 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 371 549 - -
Tsu07g02571 554 Gene3D K Homology domain, type 1 170 295 IPR036612 GO:0003723
Tsu07g02571 554 PANTHER RNA-BINDING PROTEIN RELATED 23 368 IPR045071 -
Tsu07g02571 554 Pfam KH domain 190 261 IPR004088 GO:0003723
Tsu07g02571 554 MobiDBLite consensus disorder prediction 514 528 - -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 382 396 - -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 109 146 - -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 272 299 - -
Tsu07g02571 554 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 23 368 - -
Tsu07g02571 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 271 IPR036612 GO:0003723
Tsu07g02571 554 MobiDBLite consensus disorder prediction 382 554 - -
Tsu07g02571 554 Gene3D - 89 167 - -
Tsu07g02571 554 SMART kh_6 173 266 IPR004087 GO:0003676
Tsu07g02571 554 MobiDBLite consensus disorder prediction 109 142 - -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 414 432 - -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 60 85 - -
Tsu07g02571 554 PANTHER RNA-BINDING PROTEIN RELATED 371 549 IPR045071 -
Tsu07g02571 554 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02571 Tsu-Chr7 29708403 29712746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02571 K13095 - gmx:102668428 511.146