Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02559 ATGGATTTCGTCGAATTGGAGGCAGTAGAAGGCCTTCGATGGTCATGGAATTCATGGCCATCATCAAAATCAGACCTAATAATCCCTTTAACAATCATGTGTACTCCATTATCACAACAAGGCACTGACCTACCTCTTCTCTCTTACGATCCTCTTCTATGCACTCGATGCGGCGCCGTTTTAAACCCTTACGCTCGTCTCGATTATCAATCACGTATTTGGCACTGTCCTTTTTGTTCTCAGAGAAACCCTTTCCCTCGTTCTATCGCTGATGCTAATCTCCCTGCTGAACTTTTTCCGACTTATACTACTGTTGAATATTCTTCTCCTTCCATTTTTCATCCTcctggttttgtttttgttattgatgTTTCCTCGCCGGAAGATGAACTTTGTTTACTTAAGAATGAGATTTTGCTTGTTCTTCATAATTTGCCTGATAATGCTCTTGTTGCTTTGGTTACTTTTGATTCAATGGTTTATCTTCATGATCTTCAGTTTTCTCACTGTTCTAGGATTGTTCTCTTGCACGGTGATCGTCAATTTTCTTCCGATCAGaTACGACAGTTCCTTAACATTAGCCGTCCACACCAGCTGCATATTGGACAGACACAGCCTGTCCCAAAGCAGGGATTTCTGGTTCCAATTTCAGAATCTGAGTTCAGTATCACTGCTGCATTTGAAGATATTCATTCTACATACAACTTTAAGTCTGGCAGCCGTCCCCCAAGGTCTACTGGAGCTGCAATTTCAGCTGCCCTTGGTCTTTTAGAGTGTTGTTTTGTAAATACTGGCTCCAGAATTATGGTCTTTACTTCTGGACCTGCTACACTTGGACCTGGACTGGTTGTGGACTCTGATTTCCGGCAAAGCATGAGAACCCACAATGACATCTTCAATGGGCATGTGAGACACCATGCTAAATCTTGCAGTTTCTATAAGCAGATTGCCAAGAGGCTGTCTGATGCGTCTGTTGTTCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTTGGAGCTGCTGAGCTTCGAGAACCTGTTGAGCGCTCGGGTGGATTTATGATTCTTGCTGAATCATTTGAATCTGATCAATTCAAGAAATGTCTAAGGCACCTGTTTAAACATGACAACGAGGGATTTTTGAAGATGAATTTTGATGCAACCATTGAAATAGTGACCACTAAAGATGTCAAAATTTCTGGAGCTCTTGGACCTTGCGTGTCTCTTAGAAAAAATAACGCTTCAGTAAGTGAGACAGAGGTTGGACAAGGCGGTACCTACGTGTGGAAGTTGAACACTCTCACTGACAGAACATGCATTGCTTTTTTCTTCCAAGTGAGTGATGAACAGAAAATTCAGCCTAGCTCTGCATTTTTAGTTCAGTTTATAACACGGTACAGGCAAGGGAACATGGGACTCCGAAAAAGAGTCACCACTGCTGCAAGAAGATGGGTTACAAACCATTCCACTGATATTGCTGCTGGGTTTGATCAAGAAGCAGCGGCTTCGGTTATGGCAAGACTTGCCATTCTCCGAGCAGAGACATGCCATGCTCGTGATGTTGTCAGATGGCTTGATGACACACTTATTCGTTTTACCTCTAAGTTTGGGGACTATGTTCCAGAAGATCCTTCTTCCTTCCGTTTATCTTCCAACTTTTCCCTTTATCCTCAATTTATGTTCCACTTAAGGAGATCCCAATTTATTGATGTCTCTAACACTACTCCTGATGAAACTGCATATTTCCGGCTTATGCTGAACCGTGAGGGTGTGGTGAGCTCTCTTATAATGATTCAACCTACTCTTTTCCAGTACTCGTTTGATGGGCCACCCGTTCCAGTACTTCTAGATATCCGTTCTATTTGCCCTGATTCTATATTGCTCTTTGATTCTTTCTTCCTTGTGGTGATTCATTATGGGTCCAAGATTGCTCAGTGGAGGAAGCTTGGTTATGAGAAGGACCCAAATCATGAGAACTTTGGAAAGCTGTTGGAAGCCCCGGAACTGGATGCCGAGCAATTGGTGGCTGAACGGGTTCCAGTGCCAAAGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGGTTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACATACACAGATGGTTCGGATATCATCTTTACGGATGACTTGAGCTTGCAAGTTTTTTTAGATCAATTGCAGATACTGGCAGTGCAAGGCTGA 2217 0.424 MDFVELEAVEGLRWSWNSWPSSKSDLIIPLTIMCTPLSQQGTDLPLLSYDPLLCTRCGAVLNPYARLDYQSRIWHCPFCSQRNPFPRSIADANLPAELFPTYTTVEYSSPSIFHPPGFVFVIDVSSPEDELCLLKNEILLVLHNLPDNALVALVTFDSMVYLHDLQFSHCSRIVLLHGDRQFSSDQIRQFLNISRPHQLHIGQTQPVPKQGFLVPISESEFSITAAFEDIHSTYNFKSGSRPPRSTGAAISAALGLLECCFVNTGSRIMVFTSGPATLGPGLVVDSDFRQSMRTHNDIFNGHVRHHAKSCSFYKQIAKRLSDASVVLDLFACSLDQVGAAELREPVERSGGFMILAESFESDQFKKCLRHLFKHDNEGFLKMNFDATIEIVTTKDVKISGALGPCVSLRKNNASVSETEVGQGGTYVWKLNTLTDRTCIAFFFQVSDEQKIQPSSAFLVQFITRYRQGNMGLRKRVTTAARRWVTNHSTDIAAGFDQEAAASVMARLAILRAETCHARDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVSNTTPDETAYFRLMLNREGVVSSLIMIQPTLFQYSFDGPPVPVLLDIRSICPDSILLFDSFFLVVIHYGSKIAQWRKLGYEKDPNHENFGKLLEAPELDAEQLVAERVPVPKIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDLSLQVFLDQLQILAVQG 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02559 738 CDD Sec23_C 588 708 IPR037550 GO:0030127|GO:0090114
Tsu07g02559 738 Pfam Sec23/Sec24 helical domain 496 594 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tsu07g02559 738 SUPERFAMILY beta-sandwich domain of Sec23/24 2 495 - -
Tsu07g02559 738 Gene3D von Willebrand factor, type A domain 115 382 IPR036465 -
Tsu07g02559 738 SUPERFAMILY vWA-like 115 373 IPR036465 -
Tsu07g02559 738 Gene3D Sec23/Sec24 helical domain 493 735 - -
Tsu07g02559 738 Gene3D Severin 598 702 IPR029006 -
Tsu07g02559 738 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 599 737 IPR036180 -
Tsu07g02559 738 Gene3D - 6 481 - -
Tsu07g02559 738 Pfam Sec23/Sec24 beta-sandwich domain 384 484 IPR012990 -
Tsu07g02559 738 Pfam Sec23/Sec24 trunk domain 114 369 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tsu07g02559 738 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 738 - -
Tsu07g02559 738 Gene3D - 48 104 - -
Tsu07g02559 738 SUPERFAMILY Helical domain of Sec23/24 496 598 IPR036175 GO:0006886|GO:0006888|GO:0030127
Tsu07g02559 738 SUPERFAMILY Zn-finger domain of Sec23/24 43 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g02559 738 Pfam Gelsolin repeat 610 696 IPR007123 -
Tsu07g02559 738 Pfam Sec23/Sec24 zinc finger 51 87 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g02559 738 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 738 IPR037364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02559 Tsu-Chr7 29543425 29546787 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02559 K14006 - gmx:100784000 1150.96