Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02556 ATGGCCAAGAAACGTGTCCCCGATTGGCTCAACAGTCCTCTCTGGTCTTCTCCTTCCGAACAACACCGTTTCTCCACCGCCATTCCCGACCCACCGGAACAACCTCCTTCTCCACCTCCTCTCACCATCAAACAAGATCCTCCTTCAATTCAACATTCCCGAACCAATCACAATCACAATGCCATTGCCacttcttcttattcttcttcttcttcttcctcctccgCTTCTACTTCCTCCGCCGATGAAAATTCTCATTCTCGTCAGGCTCAGTATCAGGCTAATTTGTTAGCCGAGTTATCTAGGAAGGTTATAGATATGCGAGAATTGAGAAGAATCGCATCTCAAGGGATACCTGATGTTTCTGGTTTACGTTCTACTGTATGGAAGATTTTGCTAGGGTATCTTCCACCTGATCGTGGCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAATATAAACGATTCAAACAAGAGATTCTCTTCAATCCTTCAGAAATCACAAGGAGGATGTGCAGCTCTGGCAATTATGATGCCGAAGACGTTAAATGTGAGACCAGGGGCATGCTTTCTAGATCACAAATCACTCATGGGGAACATCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTTTTCCAGGATACCGATATCATAGAGCAGATTGACCGTGATGTAAAGCGTACTCATCCAGATATGCCTTTCTTCTGTGGTGATTCTCAATTAGCAAAATCTAATCAGGAGGCTTTAAagaacatattaattatttttgcaaAGTTGAACCCAGGTATTAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTTTATTCTATGTGTTAAAAAATGATCCTGACGAGGAAAACGCAGCCTTTTCTGAAGCAGAcacattcttttgttttgttgaacTATTGAGTGGATTCCGAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATTCGTTCAACTATAACAAGATTGTCTCAGCTTTTGAAAGAACATGATGAAGAACTATGGCGTCATCTTGAGGTCACTACCAAAGTCAACCCCCAATTTTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTCAGTTTTGCTGATAGCCTTCGTATTTGGGACACCCTTATAAGTGATCCTGATGGTCCACAGGAGACACTCCTCAGGGTATGCTGTGCAATGCTAATTCTTGTCCGTAGGCGCCTCTTGGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCTTCTACAAACATTAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGTACAGCCAGTCTAA 1335 0.4022 MAKKRVPDWLNSPLWSSPSEQHRFSTAIPDPPEQPPSPPPLTIKQDPPSIQHSRTNHNHNAIATSSYSSSSSSSSASTSSADENSHSRQAQYQANLLAELSRKVIDMRELRRIASQGIPDVSGLRSTVWKILLGYLPPDRGLWSSELAKKRSQYKRFKQEILFNPSEITRRMCSSGNYDAEDVKCETRGMLSRSQITHGEHPLSLGKTSIWNQFFQDTDIIEQIDRDVKRTHPDMPFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMNEVLAPLFYVLKNDPDEENAAFSEADTFFCFVELLSGFRDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFSFADSLRIWDTLISDPDGPQETLLRVCCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQPV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02556 444 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 442 - -
Tsu07g02556 444 MobiDBLite consensus disorder prediction 1 89 - -
Tsu07g02556 444 Pfam Rab-GTPase-TBC domain 217 408 IPR000195 -
Tsu07g02556 444 ProSiteProfiles TBC/rab GAP domain profile. 119 387 IPR000195 -
Tsu07g02556 444 Gene3D - 323 443 - -
Tsu07g02556 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 324 441 IPR035969 -
Tsu07g02556 444 Gene3D - 88 142 - -
Tsu07g02556 444 MobiDBLite consensus disorder prediction 46 89 - -
Tsu07g02556 444 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 206 315 - -
Tsu07g02556 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 98 346 IPR035969 -
Tsu07g02556 444 SMART tbc_4 114 413 IPR000195 -
Tsu07g02556 444 MobiDBLite consensus disorder prediction 29 45 - -
Tsu07g02556 444 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02556 Tsu-Chr7 29496376 29501438 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02556 K24796 - gmx:100777799 645.58