Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02535 ATGAGTACGGTTGACAAGATGCTGATCAAAGGCATCCGTAGTTTCGACCCTGAGAACAAAAACGTCATCACCTTCTTCAAACCCTTAACCCTAATCGTCGGTCCCAACGGTGCCGGAAAAACAACTATCATAGAATGCTTGAAGCTTTCCTGCACCGGTGAGTTACCACCAAATGCTAGGTCTGGTCACAGCTTCATTCATGATCCTAAGGTTTCCGGTGAAACGGAAACCAAGGGACAGATTAAACTCCGGTTCAAAACTGCCGCCGGTAGAGACGTGGTTTGCATTAGGTCGTTTCAACTCACTCAAAAAGCATCTAAGATGGAATACAAAGCAATTGAAAGTGTGCTTCAAACTATAAATCCTCATTCCGGCGAGAAAGTTTGCCTTAGCTATAGATGTGCTGACATGGATAGAGAGATTCCTGCGCTGATGGGTGTTTCAAAGGCCATTTTGGAAAATGTTATATTCGTTCATCAAGATGAAGCTAATTGGCCGCTTCAGGATCCTTCCACGTTGAAAAAGAAGTTTGACGATATCTTTTCGGCAACTCGATACACAAAGGCACTGGAGGTTATAAAGAAACTTCACAAGGATCAAGCTCAAGAGATAAAGACTTACAAGCTGAAACTGGAAAATCTTCAAACATTGAAAGATGCAGCTTATACGcTTCGGGAAAGCATCACACATGATCAAGAGAAAACAGAATCTCTAAAAGATCAGATACATCAGTTGGGTGGAAGCATTAAAGATTTGGACACTAAAATTGATCATGCGGAAAAAACATCTAAACACTTACTGACGCTGAAGGAGCAAATAAATGCTAAAACTACAGAACGAAGCACTCTATTTAAGGAACAACAAGATAAACATGCCGCTCTTGAGGAGGAGTATGAAGAAACGGATGAAGAGTTGATGGAAATGAAGACCAACTTTGATGAAAAGATTGCAGTTACTAAGAAACAAATAGGCAATTTGGAAAGAGAGAAGGGGGACATTAGCACAAAAAGTGTTTGCCTTAAGAAGACAGTCGATGATTCCATCTGGGAGATCAGCAAGCTACAAACTGAAGCAGAAGCTCACATGTCTTTGAAGAAGGAACGAGATACTtgcattcaaaatatttttgccAGGTATAACTTAGGTTCTCTTCCAAAGCCACCCTTCAGCACTGAGGATGCTTTGAACCTCACCAATCGTGTAAAATCAAGGTTGGGGGATCTTGAGAAGGATCTTGACGATAAAAAGAAAGCAAATAACACTGAACTCCAGATGGCATGGGATTGCTACTTGAGTGCAAATGAAAGTTGGCAAAATACTGAGGCTAAAATACAAACTAAGAGAGAGATCAAGGTTGATATTATAAAGCGCattgaagagaagaaaaataagcTTGATTCATTGGAACTTCAAATatctaatataaatttttctcagttagatgagagagaaagagatttGCAAATTCGGCTGGAGAGGAAGATCAAGCAACACGAGGAAAGCGAATTTGAACAAAAGAAAAgtcaaaatgaaattaaaatccATAATGTGGAACAAAAGATTAAAGCTGTCAATCGAGAGTTGGTTACCATGGCTAGTGATTCAAAGGACAGAGAGAAACTATCTATTTTGAAGGGAGGTTTGGAGACGAAGAAGAAGCAACATAAAAAGATAATTGATGACCAAAAAGATAACATAAGAAGGGTGCTAAAAGGGAGGATTCCTAGTGATAAGGACTTGAAGAAGGAAATCACACAATCATCAAGGGCTGTTGCAGCTGAATATGATGAGCTGAATGCTAATTATCGGGAACTTGACAAGGAAGTAAAtgttttgcagatgaaaataCAAGAAGTAGACAATAGTCTTTCTAAACACCACAAGGATATGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATTTTCTGGAATCGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAAGAGAAGAGAGATGTACAGAAAAGCAAATATAACATTGCCGATGGTATGCGACAAATGTTTGATCCTTTCGAAAGGGTTGCCAGAGCTCATCATTTTTGCCCTTGCTGTGAGCGTTCTTTCTCggtagaagaagaagacaatTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCTGAACATATGAAAGCTCTTGCTGTGGAGTCCTCCAGTGCAGACTCTGATTATCAGCAGTTGGACAAGCTTCGTATGTGGTACGAAGAATATGTTAAACTTGGCAAGGAGACAATCCCTAATGCTGAAAAGGAACTCCAGcaaaggaaggaggagctgGATCACAAATCCCAGGCACTTGATGATGTTTTAGGTAGTTTAGCTCAAGTGAAGACTGAGAAGGATTTGGTTGACATAGTGGTGCAGCATGTTGAAAATGCTGATCGACATTTCCAAGAAATTCAAACTTTGCAATCAGATGTTGAGGATTTAGAAAGTAGGCTGGATTATGGAGGACCAGGTGCAAGGACTCTAGAAGAAATTCAATCTGAGCTCACTGCATTGCagggaacaaaGGACAAATTGCATGCCGAGATGAAGAAAATGATGGAAGATGACAGCGAGATGGAGaagcatatattaaattttacgGCACGGTTGAACCATGCAAGGAATGATAAAAATAGTGCAGCTATCAAATTGCAAGAAGTTAAAAGATTAGGAGAAGAGTTGGAACACTTAACTGAAGAAATGACCCAAGTTGATCTTGATGAGAAGAGTCTGCTAGAAGCTGTTGGACCTTTATCCAAGCGCAAAGATAAATTACTTGCAGATTATGATGAACTAAAAAGTAGACTTGACAACGAGCATGAGAATTTAGTTGGTAAAAAGAGACTTTATCAGCAACAAGCCGAAGATGTTTTTAGAGTGACTTCTAAGATCAAAGAGTACTCTGAATTAATGAAAGGAGACAGGTTGAAGGAGCTGCAGGAAAAGAAATCTCTATTAGAATCTCAACTGCAAAGTTGTGAAACCAGGATGCAGAAAATTATAGAAGAACTagacaaaaagaaagaattgatgagaGATGCTGATCCGCttaaaagaagaattgaagataACTTAAATTACAGAAAAACAAAGGCTAAAGTTGATAAGCTATTATGTGAAATTGAAATACTTGAAGAAAGTATGTTGAAGGTTGGTGTATTTGACACAATTGAAAAGGAACTCCAGAAATTATCCAAGGAGAGGGAGAGGCTTCTTGAGGAGTCAAACAGGTGCAAAGGAACAATGGATGTTTACCAGAGcaatatttccaaaaataaGATTGATCTTAAGCAGGCCCAATACAAAGACATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAGGACTTGGACAGATACTACAATGCACTTGACAAAGCACTGATGCGTTTCCACACAATGAAAATggaagaaatcaacaaaattataagGGAGTTGTGGCAACAGACTTATAGAGGACAGGATATTGACTGCATTAGTATTCATTCCGATTCTGAAGGTGGTGGTACCCGTTCCTACAGTTATAAGGTTCTCATGCAGACTGGTGATGCTGAATTAGAAATGAGAGGAAGATGCAGTGCGGGTCAGAAGGTACTGGCATCTCTTATCATACGGTTGGCTTTAGCTGAAACCTTTTGCCTCAATTGTGGAATTCTTGCATTGGATGAACCAACAACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTATCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTGATTGTAATTACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGAGTCGCAAAAGATGATCATCAGCACAGTATAATCGAATCCCAGGAGATATTTGACTGA 3951 0.3738 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVSGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTINPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRESITHDQEKTESLKDQIHQLGGSIKDLDTKIDHAEKTSKHLLTLKEQINAKTTERSTLFKEQQDKHAALEEEYEETDEELMEMKTNFDEKIAVTKKQIGNLEREKGDISTKSVCLKKTVDDSIWEISKLQTEAEAHMSLKKERDTCIQNIFARYNLGSLPKPPFSTEDALNLTNRVKSRLGDLEKDLDDKKKANNTELQMAWDCYLSANESWQNTEAKIQTKREIKVDIIKRIEEKKNKLDSLELQISNINFSQLDERERDLQIRLERKIKQHEESEFEQKKSQNEIKIHNVEQKIKAVNRELVTMASDSKDREKLSILKGGLETKKKQHKKIIDDQKDNIRRVLKGRIPSDKDLKKEITQSSRAVAAEYDELNANYRELDKEVNVLQMKIQEVDNSLSKHHKDMESRKRFIESKLQSLDQQFSGIDSYLKVLESAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSVEEEDNFVKKQRVKAASSAEHMKALAVESSSADSDYQQLDKLRMWYEEYVKLGKETIPNAEKELQQRKEELDHKSQALDDVLGSLAQVKTEKDLVDIVVQHVENADRHFQEIQTLQSDVEDLESRLDYGGPGARTLEEIQSELTALQGTKDKLHAEMKKMMEDDSEMEKHILNFTARLNHARNDKNSAAIKLQEVKRLGEELEHLTEEMTQVDLDEKSLLEAVGPLSKRKDKLLADYDELKSRLDNEHENLVGKKRLYQQQAEDVFRVTSKIKEYSELMKGDRLKELQEKKSLLESQLQSCETRMQKIIEELDKKKELMRDADPLKRRIEDNLNYRKTKAKVDKLLCEIEILEESMLKVGVFDTIEKELQKLSKERERLLEESNRCKGTMDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAILRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02535 1316 Coils Coil 507 534 - -
Tsu07g02535 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Tsu07g02535 1316 Coils Coil 1038 1058 - -
Tsu07g02535 1316 Coils Coil 839 866 - -
Tsu07g02535 1316 Coils Coil 284 329 - -
Tsu07g02535 1316 Coils Coil 933 953 - -
Tsu07g02535 1316 Coils Coil 451 478 - -
Tsu07g02535 1316 Gene3D - 1019 1315 IPR027417 -
Tsu07g02535 1316 Coils Coil 760 784 - -
Tsu07g02535 1316 Coils Coil 987 1021 - -
Tsu07g02535 1316 Pfam AAA domain 7 215 IPR038729 GO:0140664
Tsu07g02535 1316 TIGRFAM rad50: rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Tsu07g02535 1316 Coils Coil 881 918 - -
Tsu07g02535 1316 PANTHER RAD50 1 1314 - -
Tsu07g02535 1316 Coils Coil 808 828 - -
Tsu07g02535 1316 Coils Coil 1065 1092 - -
Tsu07g02535 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Tsu07g02535 1316 Gene3D - 4 281 IPR027417 -
Tsu07g02535 1316 Gene3D - 810 984 - -
Tsu07g02535 1316 CDD ABC_Rad50 4 170 IPR045171 -
Tsu07g02535 1316 Coils Coil 588 622 - -
Tsu07g02535 1316 Coils Coil 627 647 - -
Tsu07g02535 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Tsu07g02535 1316 Coils Coil 197 217 - -
Tsu07g02535 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02535 K10866 - gmx:100818545 1900.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02535 07 29109725 29124025 Tsu07g02535 07 29109725 29124025 ECH