Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02528 atgAAATTATTGTTTGCTCTTCTTCTAGTGTCTATTGCTTCACCTAGTTTGTGCTCTAATACTCCAAATGCTTTCGATATTGTTAAGTATGGTGCCAAGGGTGACGGCCAGACTGATGATtcaaatGCTTTTCTAAAAGCTTGGCAAGATGCGTGTAGTTCAACTGAAGACACCCCAACACTCATTGTACCTGAGGGAAAAATATTCATGACGCAACCTTTTACATTCCAAGGTCCTTGCAAATCCACAACCATTAATGTTGTGATTAATGGAAATATCACTGCTCCGGAAAGTCGTGAAAATTGGAAATCGGACAGTAATGATCATGATTCATGGATCACATTCAATCACATAAGTGGGCTTGTTGTGAATGGAGGTGGAACACTTAATGCTCAAGGTTCTTCTTGGTGGGACAAGAATGAGGCAAGTGATAGGCCAACGGCTCTTCGTTTTCTTGGGTGTGATAATCTAAAACATGGCCCATTGACACACCTCAACAGTCCAAGAAATCATATAAGCATAACTGGATGTGATGGCGTTTTAATTTCTAATGTTAATTTAATTGCACCAGAAAAAAGTCCCAACACCGATGGAATTGATATATCATCATCAACTCAAATTGTCATTGAACATTCAACCATCTCAACTGGTGACGATTGTGTCGCCATTAATAGTGGTTCCAAATCGATCAACATAACTAACGTTAATTGTGGACCTGGTCATGGCATTAGtGTAGGAAGCCTTGGTAAAGACGGGGAATATGCTACGGTAGAAGATATATACGTGGCACACATTACGTTCACTCGATCAACAAATGGTGCTAGAATCAAGACATGGAATGGAGGCTCTGGGTATGCGAGGaagataacttatgaaaatattaCACTTGTTGAAGTGAAGCACTCTTTGATTATTGATCAGAAATACACTGCTCTAAAATCTGCAGGTGGAGCAGTAAAAATCAGTGATGTTACTTTTCGCAACTTTCATGGAACCACAACTTACAACACTGCAGTTGAACTGAATTGTGCACAAATTGGTTGCACTGGCATTGTACTTGACGATATCAACATAGTTGGTCTTAATGGAGAGAAACCATCTTCATTGTGCAATAATGCACAAGGGTCATGCTCTTCCTGCAATCCAACTGTTGAATGCCTTGACAATTAA 1170 0.3915 MKLLFALLLVSIASPSLCSNTPNAFDIVKYGAKGDGQTDDSNAFLKAWQDACSSTEDTPTLIVPEGKIFMTQPFTFQGPCKSTTINVVINGNITAPESRENWKSDSNDHDSWITFNHISGLVVNGGGTLNAQGSSWWDKNEASDRPTALRFLGCDNLKHGPLTHLNSPRNHISITGCDGVLISNVNLIAPEKSPNTDGIDISSSTQIVIEHSTISTGDDCVAINSGSKSINITNVNCGPGHGISVGSLGKDGEYATVEDIYVAHITFTRSTNGARIKTWNGGSGYARKITYENITLVEVKHSLIIDQKYTALKSAGGAVKISDVTFRNFHGTTTYNTAVELNCAQIGCTGIVLDDINIVGLNGEKPSSLCNNAQGSCSSCNPTVECLDN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02528 389 Gene3D - 13 386 IPR012334 -
Tsu07g02528 389 PANTHER - 18 387 - -
Tsu07g02528 389 PANTHER - 18 387 - -
Tsu07g02528 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Tsu07g02528 389 SUPERFAMILY Pectin lyase-like 13 387 IPR011050 -
Tsu07g02528 389 SMART pbh1 204 225 IPR006626 -
Tsu07g02528 389 SMART pbh1 316 355 IPR006626 -
Tsu07g02528 389 SMART pbh1 257 278 IPR006626 -
Tsu07g02528 389 SMART pbh1 177 203 IPR006626 -
Tsu07g02528 389 Pfam Glycosyl hydrolases family 28 58 377 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02528 Tsu-Chr7 29031288 29033148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02528 1 388 Glycoside Hydrolase AT5G27530 48.354 3.29e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02528 K01184 - ming:122078589 392.889