Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02521 ATGTCATTCCTTCACTCTCCCAATGCACTCGCACTCAAATCTCAACTCTTCTCTTTGGCACATAAAACTAAAAACCCATTCATTGCCAACAAACTCCATGCACAAATCATTAAATCCGGTCTCAATCATCACCATCCCTTCCCCAAAACTCTCATTAACGTATACGCCAAATGCAGCCTCTTCCAAGATGCACTCAAACTGTTTGACGCATTGCCTCACAGAGACCATGTTGCTTGGGCCACAATCCTCTCCGCCTGCAACATCTCCAACCTCCCACACAAGGCCTTCTCCATCTCCCTCCCTATTCTCCAACAAGGGTTACAACCAGACCACTTtgttttctcttctctcatcAAGGCTTGTGCTAACTTGGGTTCTGTTCATATCAAGCAAGGGAAACAACTCCATGCTAGATTCTTGCTCTCGCCATTCTATGAAGATGATGTTGTTAAGTCTTCGCTTGTTGATATGTATGCTAAATTCGAGTTGCCTGATTATGGTCGTGCTGTATTTGATTCGATTTCTGAGTTGAGTTCGGTTTCTTGGACTGCTATGATATCTGGGTATGCGAGAAATGGACGAAAGGTTGAGGCTTTACGACTGTTTAGACAGTCTCcgtttaaaaatttatatgctTGGACCGCTTTGATATCTGGGTTGGTTCAGAGTGGGAATGCAACTGATGCGCTTTACTTGTTTGTTGAAATGAGGCGTGAAGGGGTTAGTATAGCTGACCCTTTAGTTCTTTCAAGTGCGGTTGGTGCTTGTGCTAATGCAGCTGTTTGGGAGCTAGGAAAACAGGTTCATGGTGTAGTCATAGCCCTTGGCTATGAGTCTTGCTTGTTTATAAGCAATGCACTTGTAGATATGTATGCTAAATGCAGTGACCTTGTTGCTGCAAAATATATATTCTGTGAGATGAGAAGAAAGGATGTTGTTTCTTGGACTTCGATAATTGTTGGCACTGCGCAACATGGACAGGCTGAGGAGGCATTGGCTTTGTATGATGACATGGTTATGGCTGGGGTTAAGCCAAATGAGGTGACTTTTGTCGGGTTGATCTATGCATGTAGTCATGTTGGTCTAGTTAGCAAGGGTCGTGCTTTGTTCAAGTCTATGGTTGAAGATTTTGGAATTAGGCCATCTTTGCAACACTATACTTGTTTGCTGGATCTTTTTAGTCGATCTGGGCATCTTGATGAGGCAGAGAATCTCATTAAAACAATGCCAGTCAAACCCGATGAACCTACTTGGGCTGCTTTACTTAGTGCTTGTAAGCAGCATGGTAACACGAAGATGGCAGTTAGAATTGCTGATAATCTATTGGATTTAAAACCAGAAGACCCTTCCAGCTATATATTGTTATCTAATGTATATGCTGGAGCTGGTATGTGGGAGAATGTTTCAAAGGTGCGGAAGTTAATGGCGGTCAAAGAAGTTAAAAAGGAGCCAGGTTATAGCTGCATTGACTTGGGAAGAGAAAGCCAGGTGTTTCATGCCGGAGAGGCATCTCAACCAATGAAGGATGAGATACTAGGTTTGATGAGGAAATTAGATGCAGAGATGAAGAAAAGGGGTTATGTTCCCGATACCAGTTCAGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTTTGGCATAGTGAAAGGTTGGCTGTGGCCTATGGGCTTCTTAAGGCTGTTCCGGGAACTATTATACGTATAGTGAAAAATCTCCGTGTTTGTGGAGATTGTCACACTGTGCTGAAGCTCACCAGCACTATAACAAGTAGGGAAATTTATGTTCGAGATGCCAAAAGATATCACCATTTTAAGGATGGTAATTGTTCATGCAATGACTTCTGGTGA 1857 0.42 MSFLHSPNALALKSQLFSLAHKTKNPFIANKLHAQIIKSGLNHHHPFPKTLINVYAKCSLFQDALKLFDALPHRDHVAWATILSACNISNLPHKAFSISLPILQQGLQPDHFVFSSLIKACANLGSVHIKQGKQLHARFLLSPFYEDDVVKSSLVDMYAKFELPDYGRAVFDSISELSSVSWTAMISGYARNGRKVEALRLFRQSPFKNLYAWTALISGLVQSGNATDALYLFVEMRREGVSIADPLVLSSAVGACANAAVWELGKQVHGVVIALGYESCLFISNALVDMYAKCSDLVAAKYIFCEMRRKDVVSWTSIIVGTAQHGQAEEALALYDDMVMAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIKTMPVKPDEPTWAALLSACKQHGNTKMAVRIADNLLDLKPEDPSSYILLSNVYAGAGMWENVSKVRKLMAVKEVKKEPGYSCIDLGRESQVFHAGEASQPMKDEILGLMRKLDAEMKKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLTSTITSREIYVRDAKRYHHFKDGNCSCNDFW 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02521 618 Pfam DYW family of nucleic acid deaminases 526 618 IPR032867 GO:0008270
Tsu07g02521 618 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 16 606 - -
Tsu07g02521 618 Gene3D Tetratricopeptide repeat domain 329 505 IPR011990 GO:0005515
Tsu07g02521 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
Tsu07g02521 618 TIGRFAM PPR: pentatricopeptide repeat domain 285 313 IPR002885 -
Tsu07g02521 618 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Tsu07g02521 618 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Tsu07g02521 618 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Tsu07g02521 618 TIGRFAM PPR: pentatricopeptide repeat domain 180 204 IPR002885 -
Tsu07g02521 618 Pfam PPR repeat family 310 358 IPR002885 -
Tsu07g02521 618 SUPERFAMILY TPR-like 205 468 IPR011990 GO:0005515
Tsu07g02521 618 Gene3D Tetratricopeptide repeat domain 144 268 IPR011990 GO:0005515
Tsu07g02521 618 Gene3D Tetratricopeptide repeat domain 8 140 IPR011990 GO:0005515
Tsu07g02521 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Tsu07g02521 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Tsu07g02521 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Tsu07g02521 618 Pfam E motif 428 489 IPR046848 -
Tsu07g02521 618 Pfam PPR repeat 50 70 IPR002885 -
Tsu07g02521 618 Pfam PPR repeat 212 241 IPR002885 -
Tsu07g02521 618 Pfam PPR repeat 180 204 IPR002885 -
Tsu07g02521 618 Pfam PPR repeat 386 410 IPR002885 -
Tsu07g02521 618 PANTHER OS11G0661000 PROTEIN 16 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02521 Tsu-Chr7 28943484 28945607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02521 14 618 Glycoside Hydrolase AT3G49170 36.526 4.63e-131 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02521 - - mtr:MTR_3g084440 1133.63