Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02515 ATGGTGGTCAGCTTCTATCTCTTTTCACTAGATAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGTAGGATTGATATGCAACTCAAACTCGTTGCTGGAAACTCTGCTGGAACTGTCACTGCTTACTACTTGTCATCACAAGGACCAACTCATgatgaaattgattttgagttcTTGGGAAATGTTAGCGGTGATCCATACATTCTCCACACAAATGTGTTTTCTCAAGGCAAAGGAAACAAAGAGCAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATCATATTCTTGGTTGACAACATTCCTATAAGGATGTTCAAGAATGCTGAATCAGTTGGTGTTCCATTCCCAAAGAATCAACCAATGAGAATCTATTCAAGTCTTTGGAACGCAGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACGGATTGGTCAAAAGCACCCTTTACAGCTTACTACCGCAATTTCAAAGCCACTCAACTCTCCTCTGTCTCTTCCAATTCCTTCTCTGATTCTGCATTGCAGAACAACGAACTCGATGCTTACGGTAGAAGAAGATTGAATTGGGTTCAAAAGTACTTCATGATCTATAATTACTGCAATGATCTTAAGCGATTCCCACAAGGTATTCCTGCTGAGTGTAGGCGTTCAAGGTTCTGA 717 0.4031 MVVSFYLFSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNKEQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRMFKNAESVGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATQLSSVSSNSFSDSALQNNELDAYGRRRLNWVQKYFMIYNYCNDLKRFPQGIPAECRRSRF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02515 238 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 237 IPR044791 GO:0004553
Tsu07g02515 238 SUPERFAMILY Concanavalin A-like lectins/glucanases 9 236 IPR013320 -
Tsu07g02515 238 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 172 IPR000757 GO:0004553|GO:0005975
Tsu07g02515 238 Gene3D - 5 238 - -
Tsu07g02515 238 Pfam Glycosyl hydrolases family 16 8 165 IPR000757 GO:0004553|GO:0005975
Tsu07g02515 238 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 191 233 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tsu07g02515 238 CDD GH16_XET 9 233 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu07g02515 238 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 8 237 - -
Tsu07g02515 238 ProSitePatterns Glycosyl hydrolases family 16 active sites. 58 68 IPR008263 GO:0004553|GO:0005975
Tsu07g02515 238 PIRSF EndGlu_transf 4 238 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02515 Tsu-Chr7 28828552 28830817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02515 8 237 Glycoside Hydrolase AT3G23730 77.917 3.99e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02515 K08235 - gmx:100499905 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02515 07 28828552 28830817 Tsu07g02515 07 28828552 28830817 ECH