Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02501 ATGGCTTTTCCTCCAAAAGTTCTCATGGTCGCAGAGAAACCTAGCATCGCTCTCTCCATCGCCACTGTTCTCTCCCACGGCAAGATGTATACAAGAAAAGGAAGCACAGAAGTTCACGAATTCGAGGGGAAGTTTCTTCGAGGGCCTGCGCGGTTTAAAGTCACATCAGTTATTGGACATGTATTCAGTGTAGATTTTCCTGGTAAATATCAAGATTGGGCGGCCACAGATCCCTTAGATCTTTTTCAAGCTCAGGTTATAAAGAACGAATCAAATCCAAAGGCGCATATTTGTAGACATTTAAATCAAGAAGCTCGTGGGTGTCGTTATTTGGTATTGTGGTTGGATTGTGATCGTGAAGGagaaaatatatgttttgaGGTTATAGAATCAACCGGTTTCAATATAAATGATGTCTATCGTGCACGATTTTCTTCTGTTACTGAGAAAGATGTTCTGAATGCTCTCGACAACCTTGTCAGACCCAACAGAGATGAAGCAATGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGTGTTGCCTTTACGCGATTTCAGACGAGTTTTTTCCAGGGAAAATATGGGAACCTGGATGCCAGAGTCATCTCCTATGGACCCTGTCAAACTCCAACTTTAGGATTTTGTGTGCAGCGGTATTTGCAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCATAGTGGCTATGAAATTCTACTAGAATGGCAACGCAGCAAATTGTTTGACATAAATGTCGCTATGATGTTTCAAAAACTGGTTGCTGAAGATGGAATTTTGGAAGTGACTGATATATCAGAAAAACAAGAAACCAAAGGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGTCCTCAGATGGCTATGCAACTAGCTGAACGCTTGTATACACAAGGCTTCATCAGCTATCCACGAACAGAAAGCACGGCATACCCTCCGTCATTTGACTTTCGTGGTGCTCTCTCTGCACAAAGAAATAATCCAACTTGGGGTAACTATGTAGAAGGGCTACTCACCAGTGGTTATCAGAAACCACGGTTGGGAACAGATGCGGGTGACCATCCTCCCATTACTCCGATGAGATCTGCATCAGAGGATATGCTAGGTAATGATGCTTGGAAGCTGTACCAGTATATCTGTCAATACTTCATAGGGACAGTATCTCCGGACTGCAAGTATGTAAGGAAAAAGGTTGAATTTTCAGTTGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGCTTTACAGCTATTATGCCTTGGCTGGCAATAAATGATAAAAGTATTCCATCATTTACAAAAGGGCAGAAAATAAAAGTATCAAAAGTTGAGCTCTATGAAGGGAGTACCACACCTCCAGATTTTCTTACTGAAAGTGAGCTGATCTCTCTAATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAATATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGGAAGCTTGTCCCAACCACATTAGGCATAACTTTAGTAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATCCGTAGCTTTATTGAGCAACAAATTACTCTTATTGCCAAGGGTCAGGTAGATCATCATCGTGTAGTGCAGCATGTAATAGAACAATTCAAACAGAAGTTTTGTTACTTTGTCAAGAAGATTGAAGCCATGGATGCATTATTTGAAGCACAATTTTCTGCACTTGTAGATTCAGGGCGTATTATGAGTAAATGTGGCAAATGCTTGCGGTATATGAAGTATATTTCTGCTCAGCCACCACGTTTGTATTGCGGTACATGTGAGGAAGTTTATGATCTTCCACAGAAGGGCACAATAAAGCTGTACAAGGAACTGACTTGTCCTTTAGACAATTTTGAGCTTTTGATATGCTCCGTGGTTGGCCCAGAGGGTAAATCATTCCCACTATGCCCTTACTGCTACAGCAATCCCCCATTTGAAGGTATCGAATCACTCATCAATACGGCTAAAACTAGTACTTCTGGCAAGACTGGCAAGGGAGCTGGCATGCCATGCAACCTATGCCCCCATCCCACATGCCCAAATTCTTTAGTTTCTCAGGGTGTATGTGCTTGCCCAGAATGCAGTGGGACACTTGTCTTAGACCCTGTAAGTGCTCCCAAATGGCGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAGGGTGCTCATAGAATCTCGACAACTAAAGAACGGTGCCCTGAATGTGACTCTTCAATCATAGAAGTGGATTTCAACAAGAAAACAACTCCTCTGGCAGACGGGGCTACGTTGCACCGTGGTTGCATTCTTTGCGATGAATTACTACATTCCCTTGTGGAGATGAAACATGGGAGAGGCTTCAAGCGGATGAGTTCACggggaagaggaagaggaagaggggGAAGAAAAGGCGGACGTGGTGGTAAAATGATGGATCCGAAAATGAGTTTCCGAGATTTCTAA 2580 0.4194 MAFPPKVLMVAEKPSIALSIATVLSHGKMYTRKGSTEVHEFEGKFLRGPARFKVTSVIGHVFSVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIESTGFNINDVYRARFSSVTEKDVLNALDNLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIHSGYEILLEWQRSKLFDINVAMMFQKLVAEDGILEVTDISEKQETKGRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQRNNPTWGNYVEGLLTSGYQKPRLGTDAGDHPPITPMRSASEDMLGNDAWKLYQYICQYFIGTVSPDCKYVRKKVEFSVGGESFHCTGQHVITKGFTAIMPWLAINDKSIPSFTKGQKIKVSKVELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYFVKKIEAMDALFEAQFSALVDSGRIMSKCGKCLRYMKYISAQPPRLYCGTCEEVYDLPQKGTIKLYKELTCPLDNFELLICSVVGPEGKSFPLCPYCYSNPPFEGIESLINTAKTSTSGKTGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKTTPLADGATLHRGCILCDELLHSLVEMKHGRGFKRMSSRGRGRGRGGRKGGRGGKMMDPKMSFRDF 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02501 859 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 623 IPR023405 -
Tsu07g02501 859 Gene3D Topoisomerase I, domain 4 288 413 IPR013826 -
Tsu07g02501 859 CDD TOP1Ac 165 583 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 ProSiteProfiles Toprim domain profile. 6 149 IPR006171 -
Tsu07g02501 859 Gene3D Topoisomerase I, domain 3 228 481 IPR013825 -
Tsu07g02501 859 PANTHER DNA TOPOISOMERASE 3-BETA-1 5 838 - -
Tsu07g02501 859 Gene3D - 2 162 - -
Tsu07g02501 859 SMART topIaneu2 280 535 IPR003602 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 MobiDBLite consensus disorder prediction 827 843 - -
Tsu07g02501 859 Pfam Toprim domain 7 146 IPR006171 -
Tsu07g02501 859 Pfam DNA topoisomerase 162 573 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 PRINTS Prokaryotic DNA topoisomerase I signature 204 222 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 PRINTS Prokaryotic DNA topoisomerase I signature 322 331 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 PRINTS Prokaryotic DNA topoisomerase I signature 399 415 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 PRINTS Prokaryotic DNA topoisomerase I signature 497 511 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g02501 859 MobiDBLite consensus disorder prediction 826 859 - -
Tsu07g02501 859 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 317 331 IPR023406 GO:0003917
Tsu07g02501 859 CDD TOPRIM_TopoIA_TopoIII 6 159 IPR034144 -
Tsu07g02501 859 MobiDBLite consensus disorder prediction 844 859 - -
Tsu07g02501 859 SMART toprim5 6 137 IPR006171 -
Tsu07g02501 859 Gene3D Topoisomerase I, domain 2 169 583 IPR013824 -
Tsu07g02501 859 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 838 IPR000380 GO:0003677|GO:0003917|GO:0006265
Tsu07g02501 859 SMART topIban2 138 234 IPR003601 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02501 Tsu-Chr7 28675633 28685877 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02501 K03165 - gmx:100791807 1587.39