Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02370 ATGGAAGGTACTCTTTTCCCTAATAGACCAGTTCTTCCACTTCCCACAAAAAAACCAACTCAAACATTGAAATTCAAACCAACATTTTCACACTCTCCACCACCACCAAAACAACAATCACCACAAACACCATCACCACAAACACCACCTTCTTTTCATATAGattctcttcttcatcatcttaaACACATTTCTTCAACTCCTATAATAACTCATACACAAACACTTGTTCCTCAACCCAACGATACCCATTTCTCTTCTAACGGAATTGAAGTTGatgagaatgatgaaaatgtTCAAGAAGGTTATAGAAAACGACCCAGTTTGTCTTCTGTTGATTATAACCATTTTGATGATGtaaagtttgtatttttatcTGATAAATCTAGGTTTATGTTGAATTCAATTATTGGGTGTTCTTTGAATGATTTGATTGAGTTTTTCAATTCTgttaaatttgaattacttGAATCTGATATTACTAGTTTGTTGAAGGGTTTAGATCTTTCTGGGAATTGGGAAAGagcttttttgttgtttgaatgGGTTTGGTTGAATTTTGGGTCTGAAAATATGAGGGTAGATAATCAATCTGTTGAACTTATTGTTAAGATATTAGGTAGAGAATCACAGTATTCAATTGCATCTAAGCTGTTTGATATAATTCCTGTTGAAGAATATTCACTTGATGTTAAGTCTTGTACTACTGTTCTTCATTCTTATGCGAGAACCGGTAAGTATAAACGTGCTATTGAAATTTTTGAGAAGATGAAAGAGACTGGTCTTGATCCAACTTTGGTTACTTATAATGTTATGCTTGATGTTTATGGGAAAATGGGTCGGTCCTGGGATAAAATTTTGGAGTTGTTGGATGAGATAAAGAGTAGAGGGCTTGAGTTGGATGATTTTTCATGTAGTACTGTGATATCTGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCAAGGAAGTTTTTCGATGATTTGAAATTGAATGGATATAAACCTGGAACACCTGCGTATAACTCTATCTTACATGTTTTTGGGAAGGCTGGAGTTTATGTAGAGGCGTTGAACATCTTTAAAGAAATGGAGGATAATAATTGTGTGCCTGATGCCATTACTTACAATGAGCTTGTGGCGGTGTATGTAAGAGCTGGGTTTCAAGATGAAGCTGCTGCTGTTATTGATAGAATGGCAAGCAAAGGAGTTGTCCCGAATGCTATTACTTATACAACCGTGATAGATGCCTATGGTAAAGTGGATAATGAGGACAAGGCTTTAAAGGTGTTTGGTCGGATGAAGGAGTTGGGCTGTGTTCCTAGTGTATGCACATACAATGCTGTTCTTGCAATGCTAGGCAAGAAGTCAAGATCAGAAGACATGATTAAGATTCTGTGCGACATGAAATTGAGTGGGTGTCCTCCTGATCATGTAACGTGGAACACAATGCTTGCTGTATGTGGTGAGAAGGGTAAGCAAAAGTATGTTAACCAGGTTTTAAGGGAAATGAAAACCTGCGGATTTGAGCCTGAGAAAGACACATTCAATACGTTAATTAGCGCCTATGGTCGGTGTGGATCCGAAGTTGATGTTGCAAAAATGTATGGGGAAATGGTTAATGCCGGCTTTACTCCATGCATAACGACTTACAATGCTCTTCTAAATGCTCTTGCTAGGCGAGGTGATTGGAAAGCGGCAGAATCTGTCATTGTTGATATGAGGAACAAGGGCTTTAAGCCGGACGAAACTTCGTACTCACTTTTGCTTCATGGTTATTCTAAAGCTGGGTATGTCAGGGGGATAGAGAgggttgaaaatgaaatttatgaTGGTCACGTCTTTCCGAGTTGGACGCTTTTGAGAACCCTTGTCCTTACATACTACAAGTGCAAACAGCTTCGGGGAATGGTAAGGGCATTTCATCAGTTGCAAAAGAATGGATACAAACTTGATATGGTTGTAATCAATTCCATGCTTTCATTGTTTGTCCAAAACAAGAAGCTCGAGAAGGCACATGAAATGCTAGATCTTATTCGCAATAATGGGTTGCAGCCGAATCTTGTGACCTATAATAGCTTAATAGATTTGTATGCTCGTGTTGGTGATTGTTGGAAATCAGAAGAAATGCTCAAGGAAATTCGAAACTCCGGTCTGAATCCAGATGTTGTGTCTTACAATACTGTCATCAAGGGATTTTGTAAAAAAGGACTCGTACAGGAGGCTATCAGAATTCTTCAAGAGATGACCAATAATGGAATTCAACCGTGTCCTATTACATTCAATACTTTCTTGTCATGCTATGCAGGGAAGGGTCTTTTTGCTGAAGCAGATGAAGTCATTAGATATATGATTGAACACCGTTGCATGCCAAATGAGTTATCGTACAAGATTGTAATTGATGGTTATATTAAAGCAAAAAAGCATAAAGAAGCAATGGATTTTGTGTCTAAGATTAAGGAGATTGATATCTCTTTTGAtgatcaatctttgaaaaagcTAGCTTCTTGTATTAGGGAGAATTTGGGGACTTAA 2532 0.363 MEGTLFPNRPVLPLPTKKPTQTLKFKPTFSHSPPPPKQQSPQTPSPQTPPSFHIDSLLHHLKHISSTPIITHTQTLVPQPNDTHFSSNGIEVDENDENVQEGYRKRPSLSSVDYNHFDDVKFVFLSDKSRFMLNSIIGCSLNDLIEFFNSVKFELLESDITSLLKGLDLSGNWERAFLLFEWVWLNFGSENMRVDNQSVELIVKILGRESQYSIASKLFDIIPVEEYSLDVKSCTTVLHSYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRSWDKILELLDEIKSRGLELDDFSCSTVISACGREGMLDEARKFFDDLKLNGYKPGTPAYNSILHVFGKAGVYVEALNIFKEMEDNNCVPDAITYNELVAVYVRAGFQDEAAAVIDRMASKGVVPNAITYTTVIDAYGKVDNEDKALKVFGRMKELGCVPSVCTYNAVLAMLGKKSRSEDMIKILCDMKLSGCPPDHVTWNTMLAVCGEKGKQKYVNQVLREMKTCGFEPEKDTFNTLISAYGRCGSEVDVAKMYGEMVNAGFTPCITTYNALLNALARRGDWKAAESVIVDMRNKGFKPDETSYSLLLHGYSKAGYVRGIERVENEIYDGHVFPSWTLLRTLVLTYYKCKQLRGMVRAFHQLQKNGYKLDMVVINSMLSLFVQNKKLEKAHEMLDLIRNNGLQPNLVTYNSLIDLYARVGDCWKSEEMLKEIRNSGLNPDVVSYNTVIKGFCKKGLVQEAIRILQEMTNNGIQPCPITFNTFLSCYAGKGLFAEADEVIRYMIEHRCMPNELSYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASCIRENLGT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02370 843 MobiDBLite consensus disorder prediction 1 52 - -
Tsu07g02370 843 MobiDBLite consensus disorder prediction 29 48 - -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 686 720 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Tsu07g02370 843 Pfam Pentatricopeptide repeat domain 463 523 IPR002885 -
Tsu07g02370 843 Pfam Pentatricopeptide repeat domain 229 279 IPR002885 -
Tsu07g02370 843 Pfam Pentatricopeptide repeat domain 394 454 IPR002885 -
Tsu07g02370 843 Pfam Pentatricopeptide repeat domain 640 697 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 791 825 IPR002885 -
Tsu07g02370 843 PANTHER - 1 839 - -
Tsu07g02370 843 PANTHER OS03G0856100 PROTEIN 1 839 - -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 721 755 IPR002885 -
Tsu07g02370 843 Pfam PPR repeat 304 332 IPR002885 -
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 616 737 IPR011990 GO:0005515
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 137 280 IPR011990 GO:0005515
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 738 841 IPR011990 GO:0005515
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 281 383 IPR011990 GO:0005515
Tsu07g02370 843 SUPERFAMILY HCP-like 241 438 - -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 756 790 IPR002885 -
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 508 611 IPR011990 GO:0005515
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 651 685 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 300 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Tsu07g02370 843 Pfam PPR repeat 717 749 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Tsu07g02370 843 Pfam PPR repeat family 756 803 IPR002885 -
Tsu07g02370 843 Pfam PPR repeat family 335 376 IPR002885 -
Tsu07g02370 843 Pfam PPR repeat family 545 594 IPR002885 -
Tsu07g02370 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 339 372 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 723 755 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 653 686 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 478 510 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 549 582 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 514 545 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 233 265 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 408 442 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 688 722 IPR002885 -
Tsu07g02370 843 TIGRFAM PPR: pentatricopeptide repeat domain 758 792 IPR002885 -
Tsu07g02370 843 Gene3D Tetratricopeptide repeat domain 384 507 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02370 Tsu-Chr7 27057706 27060237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02370 476 823 Glycosyltransferase AT1G05670 22.923 1.88e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02370 K17710 - gmx:100803889 1211.44