Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02368 ATGGAACAACCACCTTCAGACCCTCCGGTCACCGGCGAACCCATAAGCAAAAATGCATTGAAGCGTGAACTCAAGAACAAGCAGAGAGAAGAGGATAAGAGGAAAAAGGAGGAAGCTAAAAGGGCTGCTGCATTGGAAAAGGCTAAAGAGAATAAGAATGCACCAGCTGATGACGAAGATATGGATCCAACGCAATACTTGGAGAATAGGCTGAAGTATCTTGCAACTGAAAAGAATAATGGGAACAACCCTTATCCACACAAATTCTCTGTCACTTCTTCTATCGAAGAATACATCAAGGAATATGGAAGTTTGAACGATGGGCAACACCTTGACGATGTTTCTGTATCTTTGGCTGGCCGAATCATGCACAAACGTGCCTCCGGTGCAAAGCTTGTCTTCTATGATCTGCATGGTGGTGGTTTTAAGGTTCAGGTTATGGCCGATGCGAGTAAATCGGACTTGGATGAGGCTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATTTTCCCCAAAACTTTTGTGGTGCTGTCTCATTGTCTGCATATGATGCCAAGACAAATATCTGCGCCTGCTGCTGATAATGCAAATGTGAAGAAAAATGCATGGGTACCAGGAAGTACCAGGAATCCCGAATCATACATTTTGAAAGATCAGGAAACAAGATATAGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACAAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTCGACAATCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGGGGTGCTGCTGCTCGACCATTTGTAACTCATCATAATGACCTTAACATGAGATTATTCATGAGAATTGCTCCAGAACTCTATCTCAAGGAGTTGGTGGTTGGTGGGCTGGACCGTGTTTATGAAATTGGGAAACAATTTAGGAATGAGGGTATAGATTTGACACATAATCCAGAGTTTACTACATGTGAGTTCTATATGGCTTATATGGACTACAATGACGTAATGGAGATAACAGAGAAGATGTTGAGTGGTATGGTCCATGAACTTACAAAAGGCAGTTATAAAATCAAGTATCATGCAGATGGAACTGATAAGGATCCTATTTTAATAGACTTTACTCCACCATTCAGAAGGATTGACATGATTGACGGATTAGAGGAGATTACAGGCCTCAATATTCCCAAAGACTTGTCGAGCGATGAAGCTAATCAATATCTGAGGGATGCATGCAAGAAGTATGATATCAAATGTCCCCCTCCTGAAACAACTGCTCGTTTGTTGGATAAGCTTGTGGGGCACTTCTTGGAGGAAACATGTGTGAATCCTACATTCATCATAAACCAACCTGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCAAGACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAACAAACGCGAGCTTGCAAATGCTTATACTGAATTGAATGACCCCGTGGTACAACGACAAAGATTTGCTGATCAACTCAAGGATCGGCAATCAGGGGATGACGAAGCAATGGCCTTAGATGAAACATTTTGTACCGCTTTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTAGGTATTGATCGGTTGACCATGTTGTTGACTGATTCACAAAATATTAAGGAGGTTCTTCTCTTCCCTGCGATGAAACCTCAAGATATTCCTACCGCGAAACCTCAAGATTGA 1803 0.4199 MEQPPSDPPVTGEPISKNALKRELKNKQREEDKRKKEEAKRAAALEKAKENKNAPADDEDMDPTQYLENRLKYLATEKNNGNNPYPHKFSVTSSIEEYIKEYGSLNDGQHLDDVSVSLAGRIMHKRASGAKLVFYDLHGGGFKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQISAPAADNANVKKNAWVPGSTRNPESYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDVMEITEKMLSGMVHELTKGSYKIKYHADGTDKDPILIDFTPPFRRIDMIDGLEEITGLNIPKDLSSDEANQYLRDACKKYDIKCPPPETTARLLDKLVGHFLEETCVNPTFIINQPEIMSPLAKWHRSRPGLTERFELFVNKRELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQDIPTAKPQD 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02368 600 Hamap Lysine--tRNA ligase [lysS]. 69 591 IPR002313 GO:0004824|GO:0005524|GO:0006430
Tsu07g02368 600 SUPERFAMILY Class II aaRS and biotin synthetases 238 589 IPR045864 -
Tsu07g02368 600 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 260 590 IPR006195 -
Tsu07g02368 600 MobiDBLite consensus disorder prediction 18 63 - -
Tsu07g02368 600 PANTHER LYSINE--TRNA LIGASE 14 596 - -
Tsu07g02368 600 PANTHER LYSYL-TRNA SYNTHETASE 14 596 - -
Tsu07g02368 600 Pfam tRNA synthetases class II (D, K and N) 238 588 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu07g02368 600 CDD LysRS_N 115 250 IPR044136 GO:0000166
Tsu07g02368 600 TIGRFAM lysS_bact: lysine--tRNA ligase 230 591 IPR002313 GO:0004824|GO:0005524|GO:0006430
Tsu07g02368 600 MobiDBLite consensus disorder prediction 1 63 - -
Tsu07g02368 600 Pfam OB-fold nucleic acid binding domain 116 193 IPR004365 GO:0003676
Tsu07g02368 600 CDD LysRS_core 253 590 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 Gene3D - 64 206 IPR012340 -
Tsu07g02368 600 SUPERFAMILY Nucleic acid-binding proteins 61 205 IPR012340 -
Tsu07g02368 600 PIRSF LysRS2 9 600 IPR034762 GO:0004824|GO:0005524|GO:0006430
Tsu07g02368 600 Gene3D Bira Bifunctional Protein; Domain 2 234 599 IPR045864 -
Tsu07g02368 600 PRINTS Lysyl-tRNA synthetase signature 275 285 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 PRINTS Lysyl-tRNA synthetase signature 338 355 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 PRINTS Lysyl-tRNA synthetase signature 291 307 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 PRINTS Lysyl-tRNA synthetase signature 320 333 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 PRINTS Lysyl-tRNA synthetase signature 473 489 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tsu07g02368 600 Coils Coil 17 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02368 Tsu-Chr7 27022515 27030664 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02368 K04567 - gmx:100785660 1035.4