Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02346 ATGGCAACAGAGAGTCCAATTAGAATCTCAGAAGCCGGGGGGAAATGGCCCTCACATATTGAAACTTCAGGTTTTGGCGCACAACCTCGTAACATGGGGACAGAGGATTTGGGTATTCTGTTGAAGGGCCATAGGTTCCGTGGTAGTGCAAAGGATGTGGCACCCAATCGTAGCGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTATTACCACTTCAGAACACCGAGGATGCAAGCTTGACAACTCTTAGCAGAGCTGTGAAAAATTGCCAATCTGAAGAACAGTTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTAACTTCCCGGGAAAACCGCCATATAGGGCATCGTACTGGTAGTTCTAGGAATAATTGGGGATTGTCTTCTGCAGAACATAGAAGTAACAGTTCTTTACATTTACCGCAAGCAACTCTTTCAACACACAAGGAGGAGTCTGAGGATGATTCACCCCAACAACAGGCATATGACAATGAATTCGTTAAGACAAGTGGAGTACGGCGTAGACAGGATGCAGCTTCATCAGCATCACAGCAAAAAAATGTGGTTGATTTAATTCAggAGGATTTTCCTCGCACCATGTCACCTGTATATAATATGTCTCTTTCTGTAAGTCATGGACTCGTGGATAAACCAATTGAATTAGAAGCCGGTTCCAGTTCTTCTCATGACCCTCATGTTAGTGCAGTAGAGTCTGCTAAACCTACTGCAGGTGTGGATGATATTAGAATGTCATCAAGTGTCGATGTCCACACCCCTGTTGCAAGCTCTTCAACATTTGAATCCACAGCTAGCATGGGTTTTAGTAACTTAGATGTTGCGTCTCAATTGAAGGCACTTAGTGTATCTAATCTACCCAATTCAGAAAGCCTGAGTTATGACGAAAACTTGAAGAACAGCTACCAGAACAATATGATGCAACGGCAGGTATTCCCACAACAAAGCAATCCGTATGAAGTTCCTAGTGCCAATTCACAAAGTGTAAACAATGCCTATGTTGGCAGGGAACAGTTTGCTCATAATTTGAGCAAGTTGTCTGATGTCCAGCCACTACTTCAGTCATCGGGGTTTACACCTCCCTTATATGCCACAGCAGCAGCTTATATGGCATCTGTAAATCCATTTTACGCTAATATGCAGGCCTCAGGCACATATACTCCTCAATATGTTGGTGGATACACTTTAAATCCTACAGCTATTCCCCCATATATTTCTGCATACCCTCCTCACGGTGCTGTACCATTTGTTGTTGATGGAGCTACTAGTTCTAATTATACCCCACTAACACCCGGGGTTTCGACCGGGGGTAGTATTTCACATGGAGGTGAAATAATACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTGTACATCCTCCTTTTGGCGATCCTATGTACATGCAGTATAATCAGCAACCTTTTGTGGAGGGATTTGGTATTCCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAACCAAATAAATCCTTATGATTCACAAAAAAGGCCTGGTACTGGGGCATATTTGGATGATAAAAAATTACACGAACAAAGAACTGGTGCTAATATGAACTCAAGAAGAGCTGGATTATCGGTTCCTAGTTATTATGGACATATGCCAAACACAGGATTTGTAATGCAGTATCCAAGTTCACCACTTCCGAGTCCAGTTTTGTCCGGATATCCTGAAGGAAGTCCTGGCCTTTCAGGAGGTAGAAATGAAATGAAACCTTTCCCAGCTTCTGGTAGAAATGGAGGCATGTTATCTGGATGGCATGGTCCAAGGTCCTTTGAAAGTGCTCAAGACCCCAAGATTGTTAACTTCCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAACTATCCGATATCATTGGACATATTGTTGAATTTAGGCAATTCACTCTGTCTTTTACCTCCAGTGCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAACCCTGAGCAGAGAAGGGAACTTGCAGATAAACTGGCTGGTCAGATACTTCCTTTAAGTCTGCAGATGTATGGCTGTCGCGTAATCCAAAAGGCACTCGAGGTTATTGAGCACGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATATCATGAGATGTGTTCGTGATCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACCAAAAAAATTGGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTAATTTATCAATGCATCCTTATGGTTGTCGAGTCGTCCAGAGAATTCTAGAACATTGTACAGATGAAGTTCAGTGTCAGTTCATCGTGGATGAAATCTTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAACCTCAAGAAAGGAGCCAAATAATCAGCAAGCTGTCAGGACATGTTGTTCAATTTAGTCAGCATAAGTTTGCTTCGAATGTTGTGGAGAAATGTCTCGAGTACGGCGATGCCTCTGAGCGGGAAGTGTTAATTGTAGAGATTATTGGGCCTGATGGGCAAAATGATAATTTATTGGCAATGATGAAAGACCAATTTGCAAATTACGTGATCCAGAAGGTTATTGATATCTGTTCTGATAATCAGCGAGCAATGTTACTCTCTTACATAAGAGTCCATGCTCATGCTTTGAAGAAATATACTTATGGAAAACACATTGTGGCTCGTTTGGAACATCAATTTGGAGATAATCAAACACCAAGTTCATGA 2976 0.421 MATESPIRISEAGGKWPSHIETSGFGAQPRNMGTEDLGILLKGHRFRGSAKDVAPNRSGSAPPSMEGSFLAIENLLPLQNTEDASLTTLSRAVKNCQSEEQLRADPAYLAYYSSNVNLNPRLPPPLTSRENRHIGHRTGSSRNNWGLSSAEHRSNSSLHLPQATLSTHKEESEDDSPQQQAYDNEFVKTSGVRRRQDAASSASQQKNVVDLIQEDFPRTMSPVYNMSLSVSHGLVDKPIELEAGSSSSHDPHVSAVESAKPTAGVDDIRMSSSVDVHTPVASSSTFESTASMGFSNLDVASQLKALSVSNLPNSESLSYDENLKNSYQNNMMQRQVFPQQSNPYEVPSANSQSVNNAYVGREQFAHNLSKLSDVQPLLQSSGFTPPLYATAAAYMASVNPFYANMQASGTYTPQYVGGYTLNPTAIPPYISAYPPHGAVPFVVDGATSSNYTPLTPGVSTGGSISHGGEIIHANKYLGQFGYPVHPPFGDPMYMQYNQQPFVEGFGIPGHFDPLAPRASGVNQINPYDSQKRPGTGAYLDDKKLHEQRTGANMNSRRAGLSVPSYYGHMPNTGFVMQYPSSPLPSPVLSGYPEGSPGLSGGRNEMKPFPASGRNGGMLSGWHGPRSFESAQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFRQFTLSFTSSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRRELADKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFRGQVANLSMHPYGCRVVQRILEHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHVVQFSQHKFASNVVEKCLEYGDASEREVLIVEIIGPDGQNDNLLAMMKDQFANYVIQKVIDICSDNQRAMLLSYIRVHAHALKKYTYGKHIVARLEHQFGDNQTPSS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02346 991 MobiDBLite consensus disorder prediction 242 266 - -
Tsu07g02346 991 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 634 983 IPR033133 GO:0003723
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 699 734 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 844 879 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 661 698 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 807 843 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 771 806 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 735 770 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 880 915 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 699 734 IPR001313 GO:0003723
Tsu07g02346 991 SMART pum_5 922 957 IPR001313 GO:0003723
Tsu07g02346 991 Gene3D - 635 988 IPR011989 -
Tsu07g02346 991 PANTHER PUMILIO HOMOLOG 5 45 984 - -
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 880 915 IPR001313 GO:0003723
Tsu07g02346 991 MobiDBLite consensus disorder prediction 1 33 - -
Tsu07g02346 991 MobiDBLite consensus disorder prediction 164 183 - -
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 844 879 IPR001313 GO:0003723
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 735 770 IPR001313 GO:0003723
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 916 957 IPR001313 GO:0003723
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 771 806 IPR001313 GO:0003723
Tsu07g02346 991 SUPERFAMILY ARM repeat 652 980 IPR016024 -
Tsu07g02346 991 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 984 - -
Tsu07g02346 991 MobiDBLite consensus disorder prediction 138 157 - -
Tsu07g02346 991 CDD Pumilio 649 979 IPR033712 GO:0003723
Tsu07g02346 991 MobiDBLite consensus disorder prediction 118 157 - -
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 704 736 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 884 918 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 739 772 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 674 701 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 926 957 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 782 797 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 811 846 IPR001313 GO:0003723
Tsu07g02346 991 Pfam Pumilio-family RNA binding repeat 849 881 IPR001313 GO:0003723
Tsu07g02346 991 ProSiteProfiles Pumilio RNA-binding repeat profile. 807 843 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02346 Tsu-Chr7 26749826 26756874 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02346 K17943 - gmx:100780168 1587.39