Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02308 ATGGAGAACAACAGCAATGACCGAGAAGAAGATTCAAAGCCAGTGGTTCTCATCACAGGTTGTACAGGTGGAGGAATAGGTCACGCGCTTGCACGCTCCTTCGCAGCCAACAGTTGCAAAGTAGTAGCCACCAGCAGGTCACGTTCCACCATGCCAGACTTAGAGAACGATCCCAAATTCTTCCTTCAAGAACTCGATGTTCAATCCGATGAAAGTGTTAACAGAGTTGTCGATACTGTTTTGAATAAATTCGGTCGAATCGATGTTCTTGTTAATAACGCTGGTGTTCCTTGTGTTGGCCCACTTGCTGAGGTTCCTCTCTCTCAGATTCAAAACACCTTTGAAACCAATGTATTTGGTTCCATGAGAATGATCCAGGCTGTGGTTCCTCACATGGCAACTAGGAAACAGGGAAAGATTGTCAACATTGGCAGTGTCACTGGTTTGGCATCTGGACCTTGGACGGGTGCTTACGGTGCTTCTAAAGCTGCTCTTCATGCTTTAACAGATACATTAAGAGTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTGTCCCTGGAGCTGTGAAATCAAATATTGGAAATTCTGGAATAGCAATCTACAACCGGATGCCAGAGTGGAAACTCTTCAAGCCATTCGAAGAAGCAATCCGAGAGAGAGCTCTATTTTCTCAGCGGACAAGGTCTACACCTACAGATGAGTTTGCTAAACACACTGTAGCTGCTGTCCTTAGAAAGAAACCACCTGCATGGTTCTCCTATGGCCATTACTCTACTGTCATGGCTATTATGTACCATTTACCACTTTGTGTTAGAGACTTTCTTTATAAGAAAGCAATGAAATGCTGA 855 0.4398 MENNSNDREEDSKPVVLITGCTGGGIGHALARSFAANSCKVVATSRSRSTMPDLENDPKFFLQELDVQSDESVNRVVDTVLNKFGRIDVLVNNAGVPCVGPLAEVPLSQIQNTFETNVFGSMRMIQAVVPHMATRKQGKIVNIGSVTGLASGPWTGAYGASKAALHALTDTLRVELGHFGIDVVNVVPGAVKSNIGNSGIAIYNRMPEWKLFKPFEEAIRERALFSQRTRSTPTDEFAKHTVAAVLRKKPPAWFSYGHYSTVMAIMYHLPLCVRDFLYKKAMKC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02308 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Tsu07g02308 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Tsu07g02308 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Tsu07g02308 284 Pfam short chain dehydrogenase 15 196 IPR002347 -
Tsu07g02308 284 Gene3D - 13 269 - -
Tsu07g02308 284 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 270 IPR036291 -
Tsu07g02308 284 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
Tsu07g02308 284 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 10 282 - -
Tsu07g02308 284 PANTHER BNAC02G00550D PROTEIN 10 282 - -
Tsu07g02308 284 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 187 - -
Tsu07g02308 284 CDD 17beta-HSD-like_SDR_c 28 260 - -
Tsu07g02308 284 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Tsu07g02308 284 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Tsu07g02308 284 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Tsu07g02308 284 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Tsu07g02308 284 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02308 Tsu-Chr7 26132445 26135061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02308 10 195 Acyl Lipid Metabolism Gene Families AT1G62610 31.156 6.32e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02308 - - mtr:MTR_3g087850 498.049