Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02181 ATGTTGAGATGTGTGTTAAAAAGTGTTCTCATTCATTTCTCTCCATCCTCAACACGTCTCTCTTGCATTATACATTCCATCGCATCGCCGGAactctcatctctctctctctctctctctctctctctctctcatcgtCTTCGTCTTAAGATGGCAGCATTGGCATGCTTTGTTGGAAGTGCTTTATCTACACAGAGTATTAAAATAACTCTTGCCAAGGACGTGGACGTAAATGGAAGACATCCCTTATTTTCTCGGAGACATTCATCATTGAGGAGGGCATCAAAAACTATATTAGTAAAAGCATCGTTAGATCAAAGGGAACATGAAGGGAGAAGAGGATTTCTAAAATTGTTAAATGTGACAGTTGGCTTACCGGCATTATTAGGAAGCGCAAAAGCTTATGCTGATGAGCAAGAGGTTTCCCCCTCCAAAATGTCTTATTCTAGGTTTCTTGAGTATTTGGAGAAGGACCGGGTTAAAAAAGTTGATCTGTTTGACAATGGAACCATAGCTATTGTTGAGGCTGTTTCTCCCGAGTTAGGTAATAGGGTGGTGCGAGTGCGAGTTCAACTTCCTGGACTTAACCAAGAACTCCTTAAAAAATTCAGGGAAAAAAACATCGACTTTGCAGCTCATAATGCACAAGAAGAGTCTGATTCCTTCTTTGCAAACCTGATTGGAAATCTGGCTTTTCCTCTAATTGTGGTCGGAGGATTGTTCCTTCTTTCACGACGGTCATCTGGAGGGTCGGGAGGTCCCGGCGGGTCTggctttcctttttcttttggttcATCGAAAGCCAAATTTCAAGTGGAACCAAATACTGGAGTGACATTTGATGATGTTGCTGGGGTAGATGAAGCCAAACAGGATTTTATGGAGGTAGTCGAGTTTCTGAAAAAGCCCGAGAGGTTCACTGCTATCGGGGCTCGCATACCAAAAGGAGTTCTTCTCGTTGGTCCCCCAGGGACTGGTAAGACGCTATTAGCCAAGGCTATTGCGGGTGAAGCAGGTGTCCCGTTTTTCTCAATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAAGCCAAAGAGAATGCTCCTTgtattgtttttgttgatgaaattGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGTGGAGGGAACGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGGGTCATTGTCATTGCAGCAACCAACAGGGCTGACATTCTTGACTCTGCTTTATTGAGACCGGGGCGGTTTGATAGACAGGTATCAGTTGACGTTCCGGACATTCGGGGAAGAACTGAAATACTAAAGGTTCATggtagtaataaaaaatttgatgctGATGTTTCACTTGAGGTAGTTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCGGCTATATTAGCTGGTCGGCGTGGAAAGGTGGAAATTTCATCAAAAGAGATTGATGATTCTATCGATAGGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAATTTAGTGGCATATCATGAAGTGGGGCATGCCGTTTGTGGAACATTGACTCCTGGTCATGATCCTGTACAAAAGGTAACTCTAGTTCCACGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCGTCTGAAGACCCAACTCTAATCTCCAAACAACAGCTCTTTGCAAGAATTGTTGGGGGACTCGGCGGCAGAGCAGCTGAGGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTAGCTAAACAGATGGTAGTGACATTCGGAATGTCTGATATCGGTCCTTGGTCACTTATGGACGGGTCAGCTCAAAATGGAGATGTCATAATGAGAATGATGGCAAGAAATTCAATGTCCGAAAAACTTGCTGAAGACATTGATTCTGCTATCAAGAGGATATCAGATGAAGCATATGAAATTTCATTGAAGCATATTAGAAACAACCGTGAGGCCATCGATAAGATTGTGGAAGTCCTACTGGAGAAGGAGACAATTACCGGAGACGAATTCAGAGCTCTTCTTTCGGAGTTTGTTGAAATTCCTCCCGAAAATGTGGTCCCTACTTCAACTCCCTCACCAATTGCTGTTTGA 2232 0.4176 MLRCVLKSVLIHFSPSSTRLSCIIHSIASPELSSLSLSLSLSLSHRLRLKMAALACFVGSALSTQSIKITLAKDVDVNGRHPLFSRRHSSLRRASKTILVKASLDQREHEGRRGFLKLLNVTVGLPALLGSAKAYADEQEVSPSKMSYSRFLEYLEKDRVKKVDLFDNGTIAIVEAVSPELGNRVVRVRVQLPGLNQELLKKFREKNIDFAAHNAQEESDSFFANLIGNLAFPLIVVGGLFLLSRRSSGGSGGPGGSGFPFSFGSSKAKFQVEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDADVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKVEISSKEIDDSIDRIVAGMEGTVMTDGKSKNLVAYHEVGHAVCGTLTPGHDPVQKVTLVPRGQARGLTWFIPSEDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVVTFGMSDIGPWSLMDGSAQNGDVIMRMMARNSMSEKLAEDIDSAIKRISDEAYEISLKHIRNNREAIDKIVEVLLEKETITGDEFRALLSEFVEIPPENVVPTSTPSPIAV 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02181 743 SMART AAA_5 313 452 IPR003593 -
Tsu07g02181 743 Pfam AAA+ lid domain 472 515 IPR041569 -
Tsu07g02181 743 Gene3D - 139 224 - -
Tsu07g02181 743 Gene3D - 451 529 - -
Tsu07g02181 743 ProSitePatterns AAA-protein family signature. 420 438 IPR003960 GO:0005524|GO:0016887
Tsu07g02181 743 Pfam Peptidase family M41 531 719 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g02181 743 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 226 721 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g02181 743 Pfam ATPase family associated with various cellular activities (AAA) 317 448 IPR003959 GO:0005524|GO:0016887
Tsu07g02181 743 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 7 731 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g02181 743 PANTHER METALLOPROTEASE M41 FTSH 50 733 - -
Tsu07g02181 743 SUPERFAMILY FtsH protease domain-like 532 731 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g02181 743 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 50 733 - -
Tsu07g02181 743 Gene3D - 268 450 IPR027417 -
Tsu07g02181 743 Gene3D Peptidase M41 530 726 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g02181 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 520 IPR027417 -
Tsu07g02181 743 CDD AAA 292 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02181 Tsu-Chr7 24117501 24122059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02181 271 721 Miscellaneous Gene Families AT5G53170 49.339 2.22e-135 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02181 K03798 - gmx:100795567 1113.21