Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02142 ATGGCCACAAACACCATGGCTGGCTTGATTACTGGCTCTAATTCTCATTTCTCACATGATGACTCTGATGAGCATAAGCAGCCTCCTAGCAGTAAATCTTCATCGAAAATATGTCGAGTTTGTGGTGATGAGATTGGATATAAGGAAAGTGGAGAGCTTTTTGCAGCTTGTCTTGTGTGTGGATTTCCTGTTTGTAAACCTTGTTATGAGTATGAGAGGAGTGAAGGCAATCAATGTTGTCCCCAATGCAACACTCGCTATAAGCGCCATAAAGGTTGTCCAAGAGTGGTTGGAGATGAAGATGAGAACCTTGATGGAGATGATTTTGAAGACGAGTTTCCGATTAAGAATCATCATGATGATCTAGACCAGCACCGCGATGTTAATCATGCGGAAACTGGAGACTACAATCAACAGAAATTGTACTCTAATGGACAAGCTTTTTCTTCAGCTGGAAGTGTTACTGGCAAGGATTTGGAAGCGGATAAGGAATTTCTAAGCAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAATTAAGGCAAGAAAAGAGAGGTTTACTAAACAAAGAGGACGGTAAAGAAGACCcaattgaagaagatgaataccTTATGGCTGAAGCAAGACAACCATTATGGCGCAAAGTTCCGATACCGTCAAGCTTAATAAATCCATACCGCATAGTAATCGTGATGAGACTTGTAATCCTAGCTTTTTTCTTCCGTTTCCGTATCTTAACACCAGCATATGATGCATACCCTTTATGGCTCATATCAGTCATATGTGAAATATGGTTTGCATTATCATGGATACTTGATCAGTTTCCAAAATGGTTACCAATCACACGCGAAACTTACTTAGACCGTTTATCTATAAGATTCGAACGTGAAGGTGAACCAAACCAACTTTCACCTGTTGATGTTTTTGTTAGTTCTGTTGATCCTTTGAAAGAACCGCCTATTATAACAGCAAACACTGTTCTGTCAATACTTTCTGTTGATTATCCTGTCGATAAAGTCACATGCTATGTATCAGATGATGGTGCTTCTATgcttttgtttgattgtttggCTGAAACTTCTGAGTTTGCTAGAAGGTGGGTTCCTTTTTGTAAAAAGTATAGTATTGAACCAAGGGCACCCGAGTATTATTTCAATGAGAAGATTGATTACTTGAAGGATAAAGTTGAGCCTACTTTTGTCAAGGAAAGAAGGTCTATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAATGCTTTGGTGGCAAAAGCTCTGAAGAAACCAGAAGAGGGTTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTATACTTAGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCAAAACTTGTGTATATTTCGCGTGAAAAGCGTCCCGGTTATCCACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTCACAAATGCACCATTTATGTTGAATCTTGATTGTGATCACTACATCAACAATAGTAAGGCAATTAGAGAGGCCATGTGCTTCCTAATGGATCCTCAGCTAGGGAAGAAACTCTGCTATGTCCAATTTCCTCAAAGATTTGATGGTATTGATCGTCACGATCGATATGCTAATCGCAACACTGTTTTCTTTGATATCAATATGAAAGGGCTTGATGGAATTCAAGGTCCGGTATATGTCGGTACCGGAACTGTGTTCAACAGACAAGCATTGTATGGCTATGATCCACCGGTTTCTGAGAAAAGGCCAAAGATGACATGCGATTGTTGGCCTAAATGGTGTTGCTTTTGTTGTGGTTCAAggaaaaccaaatcaaaaaagAAGTCAGGAACATCAGGAAGATCAGGTCTCTTTAGTAGATTatacaagaagaagaaaatgggaGGGAAAGATTATGTTAGAAAAGGTTCTGGTTCAATGTTTGATCTTGAAGAGATTGAAGAAGGACTTGAAGGGTATGATGAGCTAGAGAAATCATCACTCATGTCGCAGAAAAATTTCGAGAAGCGATTCGGACAGTCGCCGGTTTTCATTGCTTCAACTTTGATGGAAAATGGAGGACTTCCTGAAGGCACAAATACACAATCATTGGTTAAGGAAGCTATTCATAACATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAgagATTGGATGGATTTATGGCTCAGTCACAGAAGATATATTGACTGGATTTAAGATGCATTGTAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATCAATCTATCAGATAGGTTGCACCAAGTTCTTAGATGGGCTCTTGGTTCTGTCGAGATTTTCCTTAGTCGCCATTGTCCATTGTGGTATGGTTATGGTGGAAAATTAAAGTATCTAGAGAGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCAATCCCTTTGCTTGCATACTGCACAATTCCAGCTGTCTGTCTCCTTACCGGAAAGTTCATCATTCCGACTCTGACCAACCTTGCTAGTGTTTGGTTTATGGCACTATTTATCTCCATCATTTTAACCGGCGTACTCGAGCTTCGGTGGAGTGGAGTCGCCATCGAAGACTGGTGGAGAAACGAACAATTTTGGGTGATTGGAGGTGTATCGGCACATCTTTTTGCAGTGTTTCAAGGTCTCCTAAAAGTTCTAGCTGGAGTAGACACAAACTTCACTGTCACAGCAAAAGCAGCAGATGATGCTGAATTTGGAGAATTATATCTTTTCAAATGGACAACACTTCTCATTCCACCAACAACTCTTATAATCTTGAACATTGTTGGTGTTGTTGCCGGTGTCTCTGATGCAATTAATAGTGGTTCCGGTTCATGGGGACCTTTATTTGGGAAACTATTCTTTGCATTTTGGGTCATTGTTCATTTATATCCATTCCTTAAAGGTCTAATgggaaaacaaaatagaacTCCTACTATTGTGGTACTTTGGTCAATCCTTTTGGCATCAATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCTAAACAAACTGGTCCTATACTCAAACAATGTGGAGTTGAATGCTGA 3153 0.3895 MATNTMAGLITGSNSHFSHDDSDEHKQPPSSKSSSKICRVCGDEIGYKESGELFAACLVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVVGDEDENLDGDDFEDEFPIKNHHDDLDQHRDVNHAETGDYNQQKLYSNGQAFSSAGSVTGKDLEADKEFLSNAEWQERVEKWKLRQEKRGLLNKEDGKEDPIEEDEYLMAEARQPLWRKVPIPSSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSVDYPVDKVTCYVSDDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFNEKIDYLKDKVEPTFVKERRSMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPKWCCFCCGSRKTKSKKKSGTSGRSGLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVAIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02142 1050 SUPERFAMILY RING/U-box 23 105 - -
Tsu07g02142 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 159 1050 - -
Tsu07g02142 1050 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 159 1050 - -
Tsu07g02142 1050 MobiDBLite consensus disorder prediction 1 16 - -
Tsu07g02142 1050 Pfam Cellulose synthase 306 1043 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu07g02142 1050 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 22 122 - -
Tsu07g02142 1050 CDD mRING-HC-C4C4_CesA_plant 37 86 - -
Tsu07g02142 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 22 122 - -
Tsu07g02142 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 413 598 IPR029044 -
Tsu07g02142 1050 MobiDBLite consensus disorder prediction 1 36 - -
Tsu07g02142 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 320 854 IPR029044 -
Tsu07g02142 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 111 IPR013083 -
Tsu07g02142 1050 Coils Coil 404 424 - -
Tsu07g02142 1050 Pfam Zinc-binding RING-finger 30 103 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02142 Tsu-Chr7 23599696 23606037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02142 24 1050 Glycosyltransferase AT5G05170 64.635 0.0 1418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02142 K10999 - gmx:100781996 1936