Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01836 ATGATAGACCTCAAATACATATGGGTGCTTATTTCAATCAATAGATACATTCTTGACACAATACAAGatgaaaaaacaagaaaaacactaaaaatgaGATGTATCTCAAACataaagattcaaagtcaagaattctttgaattttcagACCAATCAGTTCTATCAAATCTTTACTATGGCATTGATAGTATTGAAACTGCAATAAAATCAACACATCAAGAAGAAAGATCTTTCAACTTAAACAATTCAGAACAAATGCTTCAAGTTCCTGCAATgcttgatgaagatgaattcaCAGCTACAATTCCAAATTATTATTTGGTTTgttgttcttatttttatctTTCAATGGTTAGAAAACTTCAAGGTGATGAATGGCAAGCTGcacttcattttcttcaagCTGTTTTGGTTTCTCCTATGCTTGTTTGGAATGAATTTGCACCACAACTTTGTGAAAGTCTTTTTAGAAAACATGGAAGTAGAAGTTTGGAGTTTGTTTCTTCTTCGAATTCGGAAGAAGAAATTAATGAAGTGTTTGTTAAGGAGAAAGCTAGAAGATATAAGGAGTGTTTGGTGTATTATCAAGTTATGCTTTATGGAGAGATTCCATGGTGGAGCAGTTATTGCAGTACAAATTCAGCAAGTTATATGGATGTATCAAATACTAACTGTGTATCTTCTGCTTCAGTTCAACATGAACAAAGATTGAAAAATTGCAATAcaTATGAGAAGCTTCACCTAATGGATACTCAAGATGTGATGCAAGAAAAATTGGATGCAAAAAACATAGTTAATCTTGATTCTAGCAGATTCAAAATGTCCATTGAAGATGTTGCTTTATCAATCTCGAAACGTATAGAAAAAACAAGTATCGAATTAAATTGCCGCGTTGAGGATTTATTAATCGAAGAAGCATTGCAGccattagaattccatctcttTGATCATGCAAGTAGTAAACATAGACTCGGTCCGAAATATCATGAAGAAAGTTCTAAGATGAAATTACAAACTTCATTAGAAAAATGTGGTGAAGAGTATATTGTAAACACTGCATCGATTTTCGAGAGTTTGATCGGTTCATCAGGTACTAATTATGGTTCCTTAAAGGATGTTATTTTGGATGAGTTGTTAATAGTAATCTCAACTTCGAAAGAGGAAAAGGAACTTAGAGCGTCGGTATCGATTCTTACAACAATCATTTCGAGGAACAAATCGATTATAGACGATGTGAAGAGAAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGTAATTCTAATCTATCTGATAAATCCATCTCCTATAGATATAAAATCATTGGAACTTTTGCCGATATTAGTCGAAATTGTGTGCAATTCATCACAAAATTGTTACAAAAGTAAGCAAGAATCGGTTCTTATGACACCTCATGGGGCATCATTGATGATCATCGAAGAACTTGTGACTTCATTTGACTATGCTACAAATAACATGCATTTGGAAGTAATCAGTTCGCCTCATGTTCTCAGTGGATTTCTAGAAGTTGCGAGAAACGATAATCTTGAAGAATTTTTCTCTTTGACTACTATTCTTATAAAGTGTATGCAGTTTGATTCACAATGCAGAAAGTATGTGTCACAGTTTAGTCCTCTTGCGCCTTTTCTAGATCTTTTACAGACAAAAGATATTCGCGCCAAATGCACGGCGCTTGAGTTTTTTCATGAAATCCTATGCATACCAAGATCATCGGCTATTAATTTGCTGCAGAGGATAAAGAAAGAAAGCAGAATGAATATTATGCAAATATTGATGCATTGTGCACATCAATTACAGCCTAATCACCAGATTTTAGCTGCTAATATTATGATTCAGTTAGACACATTGAACCCTACCGATAAAAGCTTGTCTAGAGAAGAAGCTGTGCAGATTCTTGTAAGGGGATTGACATCTCAAGAAAGCTCAGAACAGATATTATCTGCATCCATTCTATCAAATCTTGCTGGGACATATGCTTGGACAGGAGAATCATATACAGCTGCATGGTGTCTGAAAAAGACAGGCTTGAACTCTCCCTATCACCAAAATATGATACGAAACTTCAACTGGTTGGATCAGAGTCTACAGGATACAAGCATAGATGTATGGTGCAGCAAAATTGCGAAATGTATCATAAGTGTTGGAGATTCAATCTTCTATAGTTTGGAGAAAGGACTAAAGAGCAAGATAAAAAAAGTTTCTAGAGACTGTCTTGTAACCATTTCATGGCTTGGATGTCAAATATCAAAAAGTCCGGAAAGCCTCAGTAATTCTGCATCAGAGATTATATTAAGAGGAATTGAGCAATTTCTGCATCCTGGAATGGAATTAGATGAAAGACTTTTGGCATGTATGTGCATGTTTAATTATGCTTCTGGGAAAGGAAAGCAAAAACTAATGAATTTCTCGGAAGGAGTAAAAGAATCATTAAGACGACTTTCGAACATAATTTGGATGGCCGAGGAATTACATAGGGTAGCTGATTTCTTGCTTCCAAACACATCACGTATTTCTTGTGTTCATACGCAAATACTTGAGGTCGGTCGCAACTTTAGCATATCAGTTTGCTCCCTCATATACTACAAGGGACTGTTATTCAGCGGATACTCGGATGGATCAATTAAGGTATGGGATATTAGGGGGCAGTCAGCTAGTCTTGTATGGGACATTAAAGAGCACAAGAAGTCAGTGACATGCTTTTCAATTTATGAACCATTAGACGGCCTTTTAAGCGGATCCGCTGATAAAACCATAAGGGTGTGGAAAATGATTCAAAGAAATCTTGAATGTCTTGAAGTTATAGCCATGAAGGAACCAATCCATCATTTAGGTGCACATGGCGAGACAATTTTCGCAATTACTGAAAGACAAGGAGTAAAGCTTGTTAACAAATCAAGAGAGATAAGAGATATTTTCAAAGGTAAGCATGGGAAGTGCATGGCAGTTTCTCAAGGAAAGTTATATATTGGATGCACAGATTCGAGCATACAGGAGTATTCCGCGACACACAATAGGGAACTAGAAATCAAACCACCTACAAGAAGTTGGAGGAAGCAAAGCAAGCCTATCAATTCAGTTGTAACCTATAGAGATATGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACAATCAAGGAATGGAAAAGAAATTGCAAACCCAAAGTTTCACTCCTTAATGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATCTCAAGCTCATCAGCAAGCAGTATTCAGATCTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGAATGTCAGCAGGGAGCAAGATAACAAGCATCTATACTGCTaatgacattattttttgtGGTACTGAGAAGGGACTAATCAAGGGCTGGATCCCTCTGTAG 3444 0.3476 MIDLKYIWVLISINRYILDTIQDEKTRKTLKMRCISNIKIQSQEFFEFSDQSVLSNLYYGIDSIETAIKSTHQEERSFNLNNSEQMLQVPAMLDEDEFTATIPNYYLVCCSYFYLSMVRKLQGDEWQAALHFLQAVLVSPMLVWNEFAPQLCESLFRKHGSRSLEFVSSSNSEEEINEVFVKEKARRYKECLVYYQVMLYGEIPWWSSYCSTNSASYMDVSNTNCVSSASVQHEQRLKNCNTYEKLHLMDTQDVMQEKLDAKNIVNLDSSRFKMSIEDVALSISKRIEKTSIELNCRVEDLLIEEALQPLEFHLFDHASSKHRLGPKYHEESSKMKLQTSLEKCGEEYIVNTASIFESLIGSSGTNYGSLKDVILDELLIVISTSKEEKELRASVSILTTIISRNKSIIDDVKRKGLRLCDLASALKQNVHEAVILIYLINPSPIDIKSLELLPILVEIVCNSSQNCYKSKQESVLMTPHGASLMIIEELVTSFDYATNNMHLEVISSPHVLSGFLEVARNDNLEEFFSLTTILIKCMQFDSQCRKYVSQFSPLAPFLDLLQTKDIRAKCTALEFFHEILCIPRSSAINLLQRIKKESRMNIMQILMHCAHQLQPNHQILAANIMIQLDTLNPTDKSLSREEAVQILVRGLTSQESSEQILSASILSNLAGTYAWTGESYTAAWCLKKTGLNSPYHQNMIRNFNWLDQSLQDTSIDVWCSKIAKCIISVGDSIFYSLEKGLKSKIKKVSRDCLVTISWLGCQISKSPESLSNSASEIILRGIEQFLHPGMELDERLLACMCMFNYASGKGKQKLMNFSEGVKESLRRLSNIIWMAEELHRVADFLLPNTSRISCVHTQILEVGRNFSISVCSLIYYKGLLFSGYSDGSIKVWDIRGQSASLVWDIKEHKKSVTCFSIYEPLDGLLSGSADKTIRVWKMIQRNLECLEVIAMKEPIHHLGAHGETIFAITERQGVKLVNKSREIRDIFKGKHGKCMAVSQGKLYIGCTDSSIQEYSATHNRELEIKPPTRSWRKQSKPINSVVTYRDMLYSASKHVEGTTIKEWKRNCKPKVSLLNDKGDNVVAMEVVEDFLYLISSSSASSIQIWLRGVPKKLGRMSAGSKITSIYTANDIIFCGTEKGLIKGWIPL 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01836 1147 ProSitePatterns Trp-Asp (WD) repeats signature. 880 894 IPR019775 -
Tsu07g01836 1147 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 938 - -
Tsu07g01836 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 938 IPR001680 GO:0005515
Tsu07g01836 1147 SUPERFAMILY ARM repeat 505 812 IPR016024 -
Tsu07g01836 1147 Gene3D - 998 1146 IPR015943 GO:0005515
Tsu07g01836 1147 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 247 - -
Tsu07g01836 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 902 IPR001680 GO:0005515
Tsu07g01836 1147 SMART WD40_4 898 937 IPR001680 GO:0005515
Tsu07g01836 1147 SMART WD40_4 1066 1106 IPR001680 GO:0005515
Tsu07g01836 1147 SMART WD40_4 853 893 IPR001680 GO:0005515
Tsu07g01836 1147 SMART WD40_4 980 1015 IPR001680 GO:0005515
Tsu07g01836 1147 SUPERFAMILY WD40 repeat-like 858 1143 IPR036322 GO:0005515
Tsu07g01836 1147 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 333 1147 - -
Tsu07g01836 1147 Pfam WD domain, G-beta repeat 903 937 IPR001680 GO:0005515
Tsu07g01836 1147 Gene3D - 377 731 IPR011989 -
Tsu07g01836 1147 Gene3D - 848 993 IPR015943 GO:0005515
Tsu07g01836 1147 PANTHER OS04G0584500 PROTEIN 7 247 - -
Tsu07g01836 1147 PANTHER OS04G0584500 PROTEIN 333 1147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01836 Tsu-Chr7 18305901 18313312 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01836 - - mtr:MTR_2g436530 1999.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01836 07 18305901 18313312 Tsu07g01836 07 18305901 18313312 ECH