Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01830 ATGTCAGATTGTAGAATATTCCACCACATTCTCAAACGCTGTAAAGCTTCTATGGATTCCAAAACCGTTGCTAAAACTCACGCAAAAATCATTATACTTGGTTATGCCACATACCCATCTATTGTAGCGTCTCTAATATCAACATATGCACATTGTCACCAACCCCACATAGCCCATAATTTGTTTTCTCGAGTTATGAATTTGTTCAACATGAATTTGGTGATTGAAAGTTTAGTGAAATCTGGTGAATGTGATATTGCCAAGAaggtgtttgataaaatgtctgTTAGAGATGTTGTTACTTGGAACACAATCATTGGTGGGTATGTTAAAAACTCGCGCTTTCTTGATGCGTTGAGTTTTTTCCGCGGTATGTTGAGTGCTAAGGTTGAGCCTGATGGGTTTACCTTTGCTTCCGTGGTTACTGGGTGTGCACGTCTTGGTTCATTTTGTAATGCCAAGTGGGTGCATGGTTTAATGGTTGAGAAGAGGGTTGAACTGAATTATATACTCAGTGCTGCATTGGTTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCGAAGCGGGTTTTTGAGAGTGTGGTGCGTGATCATGTGTCTGTTTGGAATGCTATGATTAATGGGTTGGCTATTCACGGGCTTGCTTTGGATGCAACTGCGGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCAGATTCTGTTACTTTTATTGGGATTTTGAAAGCATGTAGTCATTGTGGCTTAGTTGAGATAGGTCGCAAGTACTTTGAAATGATGCAGAATCGATTTTTGATTAGGCCGCAGCTTGAGCATTATGGAACCATGATTGATCTGTTGGGACGAGCAGGGCATTTGGAAGATGCATGTTCAGTGATTAAGACGATGTCGGTGGAGCCCGATGTTGTTATTTGGAGAGCACTTCTGAGTGCTTGTAGAATCCACGGTAAGAAAGAACTCGGCGAATTTGCTATCGCAAATATTTCACGCCTTGAGAGTGGAGATTTTGTCTTGCTGTCGAACATGTATTGTTCTTTCAAGAACTGGCATGGTGCTGAGAGGGTGAGACAGATGATGCAAATGGAAGGAGTTCGTAAAAAGCATGGTAAGAGTTGGATTGAATTCGGGAACTTCATTCACCAATTCAATGCTGCTGATCAGTCACATGCAGAAATGAAAGCAATTTACAGGGTGCTGGAAGGTTTGATGCAGAGAGCTAAACTGGAGGGATTCACCCCCTTGACGGATCTCGTTTTGATGGATGTGTCTGAAGAGGAAAAGGAGGAAAACTTGACGTTTCATAGCGAGAAGTTGGCTTTGGCTTACGGCGTTTTGAAAAGTAGCCCGGGATCAAAAATCACGATTTCCAAGAACCTTCGTATATGTCAAGACTGTCATAATTGGATTAAAATTGTGTCAAGAATATTAAACAGAGAGATAATTGTGAGGGATCGTATCCGTTTTCATCAATTTGAAGGTGGATTTTGTTCTTGTGGAGACTACTGGTAA 1512 0.4074 MSDCRIFHHILKRCKASMDSKTVAKTHAKIIILGYATYPSIVASLISTYAHCHQPHIAHNLFSRVMNLFNMNLVIESLVKSGECDIAKKVFDKMSVRDVVTWNTIIGGYVKNSRFLDALSFFRGMLSAKVEPDGFTFASVVTGCARLGSFCNAKWVHGLMVEKRVELNYILSAALVDMYAKCGRIDVSKRVFESVVRDHVSVWNAMINGLAIHGLALDATAVFSRMEVENVLPDSVTFIGILKACSHCGLVEIGRKYFEMMQNRFLIRPQLEHYGTMIDLLGRAGHLEDACSVIKTMSVEPDVVIWRALLSACRIHGKKELGEFAIANISRLESGDFVLLSNMYCSFKNWHGAERVRQMMQMEGVRKKHGKSWIEFGNFIHQFNAADQSHAEMKAIYRVLEGLMQRAKLEGFTPLTDLVLMDVSEEEKEENLTFHSEKLALAYGVLKSSPGSKITISKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGFCSCGDYW 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01830 503 Pfam PPR repeat 273 297 IPR002885 -
Tsu07g01830 503 Pfam PPR repeat family 97 146 IPR002885 -
Tsu07g01830 503 Pfam PPR repeat family 200 246 IPR002885 -
Tsu07g01830 503 Gene3D Tetratricopeptide repeat domain 8 170 IPR011990 GO:0005515
Tsu07g01830 503 Pfam E motif 316 375 IPR046848 -
Tsu07g01830 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Tsu07g01830 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 449 - -
Tsu07g01830 503 PANTHER OS07G0578800 PROTEIN-RELATED 4 449 IPR045215 GO:0003723|GO:0009451
Tsu07g01830 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Tsu07g01830 503 TIGRFAM PPR: pentatricopeptide repeat domain 274 298 IPR002885 -
Tsu07g01830 503 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Tsu07g01830 503 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Tsu07g01830 503 Gene3D Tetratricopeptide repeat domain 176 404 IPR011990 GO:0005515
Tsu07g01830 503 Pfam DYW family of nucleic acid deaminases 411 503 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01830 Tsu-Chr7 18279564 18281179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01830 72 503 Glycoside Hydrolase AT3G49170 39.180 4.52e-103 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01830 - - gmx:100788229 834.328