Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01798 ATGGCATTTTTGTCTTTGAACCAGGAAATGATGGTGCTCATTCTTCAATTTCTTGATGAAGAGAATTTGAAGGAGACAATGCACAAgATGGAGCAAGAGACGGCTATCTTTTTCAATCTTaagtattttgaaaagaaagtaCTTGAAGGAGAATGGCAAGAATGTGAAAAGTATCTTGGGGGTTTTACGAATATCAATGATAACAATTTCTCCATGAAAATGTTTTTTGAAATCAGAAAACAAAAGTATTATGAAGCTTTAGATCGAAATGATAGAACAAGGGCTGTTGAAATTCTGGTGAATGATTTGAAAATCTTTTCAACATATGATCAAGCATTGTACAAGCAATTAACAAATCTCATAACCCTTGACAATCTTAGGGAGATTATACATCTATCACATTATCAAGATGTAAGATCAAGTAGAGTCCTGCTGATGACTGAGCTTAAAGCATTGATTAATGCTAATAATAGACTCAATAATAAGCTTAAGCTTCCAAAATTGAGTGAGTCGCGGTTGCGACAACTAATAAATCATGGATTGAATTGGCAGCACGCGCTTTGCAAAGATCCAAACCAGAACCCAAACTTCATGACTATTTTGACTGATCACACTTGTGATCGAACTCAGAGAGAACATGACATGCCTATTTTAGCTATGCTTCCTGCTCCACCAAATGCTGCAAATCATCCATCTCGCGCGGTTCTGCCATTTCTATCAGCCCCTGTAGCTCCTATGGCTAATGTTTTACCGGCATGGATGGTGAATGGAAATCCTTCCTCATCTTCTCGACCATTTGCTGCACTGACAGCTTCCGCATTGCCTGGTCCTTCAAATCTAGATCTAGCCAACATTCCGAGGCATACAAGAACACCCATTACTCATGCACCGATCAGTGATCAAGAAATAAGACGGTTTGTGTTACCACAAACTTTTGATGAGAGGGAAGCAAATATTGCTCTAGCTAGAATCCTGGAGAACAGAAGAAATTCGAACGATGTTTCTAAAGCTTGGGATTTGAAGCAAATCATTCATCCTACTCAGTGTCGAAGAGTTACTATGCCGGAAAGTATAGGTCCCGGTAACAGGGTTTGTCTTCTATACACAAAACCTGGAACTGGTCTTCTAGCTCTTGGTTCAAATGGGGTTATGAAGATGTGGAAATGGAGCGTTACTCAATCCAATCCTACTGGAAAGGCGACGACAAGTGCTAATCCTGAATATTCACCGAATAAGGGAATTTTTATGATTAAGGATGTCCGGAACAATATGGACGCGACTCCCTGCTTGGACATTTCAAATAATGATGCTTTTGGCTTAGCTGCGTGCGGAGGAATTGTTTCATTGTTCAACATGGCGTCATCGTATAAAGTATTGTATCAGTTTATGAGTCCTCCACCGGCTGCAACGTGCATTGCTTTCATGCCTCAAGACAATAACATTGCTTCGTTCGGAAGGCAAGATTCTGCGATTCGTATTTTCAATATTAGGCACGCTGAGCTTATAGCAGAATTGGAGGGTCACATAAGGTACATTACTAGTATAGCTTTTTCGATTCGGCTGAATATAATGGTTTCTGCGGGCGCTGATTCTCAGCTTATCTCTTGGAACATGAACAATTGGTCTATGAATAGATCAGTGTCAATCCAAATGCGGACCGGTGAAAATGCGGCTCCAAGTGAGACTAAAGTTCAATTTCATGGTGATCAAGTAATGTTGCTGGCATGCCATCAGACACAGCTAGTTATATATAATGCTTCAAACATGAAGCCGATCTGTCGGTGGTTTCCACATGGTGGCCTGCAAGCTTGTGCAATATCTTCAGCAACCTACTCGAGCGATTTCGTACAAATTTATGCGACATTTACTGATGGAAACATCGGAATATTTGATGCTCGCAGCCTCAAACTAAGATGTCGTATTGCTCCATCTGCATACCTATATCAGCCCGCATCAATCAGcCAAAATGTGTACCCTCTTGTTGTTGCAGCAAATCCAGAAGAGCCTAATCAATTTGCAATTGCACTGTCAAATGGGACTATTAAGGTTTTTGAGCCTAATCAATTTACTACAAGTGTTTGCTACAATGGCCATATATGA 2100 0.4005 MAFLSLNQEMMVLILQFLDEENLKETMHKMEQETAIFFNLKYFEKKVLEGEWQECEKYLGGFTNINDNNFSMKMFFEIRKQKYYEALDRNDRTRAVEILVNDLKIFSTYDQALYKQLTNLITLDNLREIIHLSHYQDVRSSRVLLMTELKALINANNRLNNKLKLPKLSESRLRQLINHGLNWQHALCKDPNQNPNFMTILTDHTCDRTQREHDMPILAMLPAPPNAANHPSRAVLPFLSAPVAPMANVLPAWMVNGNPSSSSRPFAALTASALPGPSNLDLANIPRHTRTPITHAPISDQEIRRFVLPQTFDEREANIALARILENRRNSNDVSKAWDLKQIIHPTQCRRVTMPESIGPGNRVCLLYTKPGTGLLALGSNGVMKMWKWSVTQSNPTGKATTSANPEYSPNKGIFMIKDVRNNMDATPCLDISNNDAFGLAACGGIVSLFNMASSYKVLYQFMSPPPAATCIAFMPQDNNIASFGRQDSAIRIFNIRHAELIAELEGHIRYITSIAFSIRLNIMVSAGADSQLISWNMNNWSMNRSVSIQMRTGENAAPSETKVQFHGDQVMLLACHQTQLVIYNASNMKPICRWFPHGGLQACAISSATYSSDFVQIYATFTDGNIGIFDARSLKLRCRIAPSAYLYQPASISQNVYPLVVAANPEEPNQFAIALSNGTIKVFEPNQFTTSVCYNGHI 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01798 699 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 38 IPR006594 GO:0005515
Tsu07g01798 699 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 94 IPR006595 -
Tsu07g01798 699 Gene3D - 331 552 IPR015943 GO:0005515
Tsu07g01798 699 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 5 293 - -
Tsu07g01798 699 Coils Coil 142 162 - -
Tsu07g01798 699 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Tsu07g01798 699 SMART WD40_4 649 685 IPR001680 GO:0005515
Tsu07g01798 699 SMART WD40_4 498 537 IPR001680 GO:0005515
Tsu07g01798 699 SMART WD40_4 588 631 IPR001680 GO:0005515
Tsu07g01798 699 SMART WD40_4 455 495 IPR001680 GO:0005515
Tsu07g01798 699 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 320 691 IPR027728 GO:0006355
Tsu07g01798 699 SMART Lish 6 38 IPR006594 GO:0005515
Tsu07g01798 699 Gene3D - 553 699 IPR015943 GO:0005515
Tsu07g01798 699 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 320 691 - -
Tsu07g01798 699 SUPERFAMILY WD40 repeat-like 421 697 IPR036322 GO:0005515
Tsu07g01798 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Tsu07g01798 699 SMART ctlh 36 94 IPR006595 -
Tsu07g01798 699 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 5 293 IPR027728 GO:0006355
Tsu07g01798 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01798 Tsu-Chr7 17788551 17793345 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01798 - - dcr:108201148 483.796