Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01768 ATGCTTGATTCAGGAGCTTCATACCATATGTGCCCAAATAGGAAGTGGTTTACTACCTACGAAAGCACAGATGGTGGTACCGTTTTAATGGGGAATAACCATGCCTGTAAAATTATGGGGTATGGTACAGTACGAATCAAGATGCATGATGGAGCGGTAAGGACTTTGAGGAACGTGAGACATGTCCCTAATTTGCGAAAAAATCTAATTTCTCTTGGTGTATTAGAGGAAAAtgattgcaaaataatcttGGAAAATGGAGTCTTAAAGGTTGTTCGTGGTTCGTTGGTTGTGATGAAGGGGGTTCGTCGCAGGAATCTTTATCCTCTTATTGGGGAAACTGTCACAGGTGATTTGGCAGTTGGAATCAGTGGAAGTAAAGATCAAACAGAATGTACGAGGATGTGGCACATGCGCCTTGGGCATATGTCTGAAAAAGGTCTATCACTGCTTGGTGAGAAAGGCTTGTTGAAGAACATGGAAAAGCCATGCATGGAATTTTGTGAACATTGTGTGTATGGCAAAGCACATAGGTTGCGGTTTTCTGCAAGCAAGCATAAAAGCAGGGGAATATTAGACTACGTGCATACTGACGTTTGGGGTCCGGCTCCGGTTACTTCTAAGGGTGGTTCCAGGGGAATATTAGACTACGTGCATACTGACGTTTGGGGTCCGGCTCCGGTTACTTCTAAGGGTGGTTCCAGGTACTTTGTTACATATGTTGATGATCATTCGAGGTATGCTTGGGTTTATTTTCTTAAGCATAAGAATGAGGTATTTGATATTTTCAAGTGTTGGAAAGCAATGGTTGAGAACAGAACGGGTAGAAAGCTGAAAACTCTGCGATCAGATAATGGTACAGAGTATACGGATGGAGCTTTCAAGAGGTTTTGTGATCAGGAAGGCATTGTTAGACACTGGACGGTCAGAGGCACACCACAACAGAATGGGGTCGCGGAAAGACTGAACCGTACACTTCTTGAGAAAGCAAGGTGTATGCGCTCTAATTCTGGGTTAGGTCGAGAATGGTGGCCAGAGTCGATTGCTACAGCTTGCTATGTAGTAAATAGATCCCCACATTCTAGTTTGGATGGAGACACGCCATATATGGTGTGGTCAGGTGAACATGCTGATTATGAAGGACTGAAAATCTTCGGATGCACGGCCTATTATCATGTCAAGGATAACAAACTTGATAATAGAGCCAAGAAAGCTATCTTTCTAGGATATGCAAAAGGGGTCAAAGGATATCGCCTTTGGAGTGTAGAAGATTCTAAGTTTGTGATCAGCAGGGATGTTACATTTGACGAAAAATCCATGGTAGCTTTGTCAAAAGCTATGAAACCTAATGATGGTGATGTGACGATATCAAATAAACAAGTTATTGAGATAGAATCTGAAGACCAACCAGATTCTAGTCGTGGTCAGGTGGAGAATCCTATCACCGGTGAAGACGAGGAAGAGGATGAACGTGATCATGAGGAGTCTCCTAGACAGTGGTACAAGCGATTTGATTCTTTTATGATAAAACAAGGTTTTTCTAGAAGTAGTTATGACAGTTGTGTCTATGTTCAGAAGCTTCGTGGAGGTGATTACATCTATCTATTATTGTATGTCGATGACATGCTTATTGCTTCAAAAAGCAAGGTGGAGATAGATGAGCTGAAGTCTAAACTTGGTAAAGAGTTTGAAACGAAGGATTTGGGCGCTGCAAAGAAAATACTAGGTATGGAGATTAGAAGAGAGCGGACAAACCGGAAATTGTTCTTGAGTCAAAAAGGCTATTTAGAACGGGTTGTTGAAAGGTTTGGAATGAAAGGTGCTAAGTCGGTGGTTACTCCGTTAGCTCCACATTTTAGGCTTTCTGGTAATCAGTCTCCCACTACAGCAGAAGATAAGGCATACATGGAAAATGTACCTTATGCTAGTGCAGTTGGCAGTTTGATGTACGCTATGGTGTGTACACGTCCAGATATTTCACAAGCGGTAAGTGTTGTCAGTAGATTTATGGCGAATCCGGGAAAGGCGCACTGGGAAGCAGTGAAATGGATTTTGAGTAACTTTGGAGTGGCTGATGATGATGAGCCTGATACCCAAataggtggtggtggtgggttTGGTGGTGCTGGTAATGGAGGCGGTGGAGCTGGTCTTGGCGGTGGTTCAGgagttggtggtggtggttctgGAGTTGGTGGCGGTGGTGGTGTTGGAGGGATTGGAGGTGGCGGAGGTGGAGGCAGCTTTGGTGATCCTTCTCAAATTATATCCAAAGCCTTGCTATGTTTCAATGATAAATATattTATCAAAGCTGTGAAGAGTCATACAGATTGAGTGAAAATGGGAATTTAGATGTGCCACCAGAGAAAACGGATGCATTCTGTGAAGGACCATGCATGTCAGAGACAAACTTGGTCTTAGGCTGCATTGATAACATTTTCAGAAACTTCATATTCTACAACAGAGCAACCATAGAAGATGTCAAAGAAACAATTCTAGCTGGTTGTGGTTATGGTCCTGAAAGAGGAAACTTCAATGTGGCTGAGCACATCCAAGAAAACAAAGCTGTGAAGGCTACTAGTCATGTTCTAATGGGCCTTGCTTTGATTATAATGGGCCGTGCTATATTGCTCTAA 2637 0.4187 MLDSGASYHMCPNRKWFTTYESTDGGTVLMGNNHACKIMGYGTVRIKMHDGAVRTLRNVRHVPNLRKNLISLGVLEENDCKIILENGVLKVVRGSLVVMKGVRRRNLYPLIGETVTGDLAVGISGSKDQTECTRMWHMRLGHMSEKGLSLLGEKGLLKNMEKPCMEFCEHCVYGKAHRLRFSASKHKSRGILDYVHTDVWGPAPVTSKGGSRGILDYVHTDVWGPAPVTSKGGSRYFVTYVDDHSRYAWVYFLKHKNEVFDIFKCWKAMVENRTGRKLKTLRSDNGTEYTDGAFKRFCDQEGIVRHWTVRGTPQQNGVAERLNRTLLEKARCMRSNSGLGREWWPESIATACYVVNRSPHSSLDGDTPYMVWSGEHADYEGLKIFGCTAYYHVKDNKLDNRAKKAIFLGYAKGVKGYRLWSVEDSKFVISRDVTFDEKSMVALSKAMKPNDGDVTISNKQVIEIESEDQPDSSRGQVENPITGEDEEEDERDHEESPRQWYKRFDSFMIKQGFSRSSYDSCVYVQKLRGGDYIYLLLYVDDMLIASKSKVEIDELKSKLGKEFETKDLGAAKKILGMEIRRERTNRKLFLSQKGYLERVVERFGMKGAKSVVTPLAPHFRLSGNQSPTTAEDKAYMENVPYASAVGSLMYAMVCTRPDISQAVSVVSRFMANPGKAHWEAVKWILSNFGVADDDEPDTQIGGGGGFGGAGNGGGGAGLGGGSGVGGGGSGVGGGGGVGGIGGGGGGGSFGDPSQIISKALLCFNDKYIYQSCEESYRLSENGNLDVPPEKTDAFCEGPCMSETNLVLGCIDNIFRNFIFYNRATIEDVKETILAGCGYGPERGNFNVAEHIQENKAVKATSHVLMGLALIIMGRAILL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01768 878 MobiDBLite consensus disorder prediction 464 497 - -
Tsu07g01768 878 Gene3D - 211 384 IPR036397 GO:0003676
Tsu07g01768 878 Pfam GAG-pre-integrase domain 107 176 IPR025724 -
Tsu07g01768 878 Pfam Integrase core domain 217 313 IPR001584 GO:0015074
Tsu07g01768 878 PANTHER - 3 471 - -
Tsu07g01768 878 PANTHER - 495 685 - -
Tsu07g01768 878 ProSiteProfiles Integrase catalytic domain profile. 200 376 IPR001584 GO:0015074
Tsu07g01768 878 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 496 615 IPR013103 -
Tsu07g01768 878 SUPERFAMILY Ribonuclease H-like 214 370 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01768 Tsu-Chr7 17470456 17480129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01768 494 685 Receptor kinase-like Gene Family AT4G23160 33.854 1.25e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01768 - - rcn:112194950 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01768 07 17470456 17480129 Tsu07g01768 07 17470456 17480129 ECH