Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01750 atgagGGATATGGCTTTGCAGAAGTATGTTCCTTCTGGTGATGCACCTACTGTTAATTTGAAACATTTGAGTTTCTCCAGTAAGGTCCCTGAGAAAACTCAGTCTGATGTGGCAAATCAGAATCATGAGATGGATGTGAATGTTGACCTTAGGGAAGTTTATTTTCTCATTATGCACTTCCTTTCTGGCGGGCCATGTCAAAAAACTTATTTACAGTTTAGGAATGAGCTTTTGGAGAATCAACTATTGCCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGCATGCAGTGGTGTTATACAAGATGATGGTCAATCCTTCCCTTTAGGTTACAATAAGTTGGTGGAGAGGTATCCTCATATTGAAAAGGATCACTTGGTAAAACTTTTGAAGCAATTGTTATTAAACAAAGCCCCCTTGTCACCAGGCTTGAGTACTGGAAATGCTCCAAATGCAGCTGATGTACCCACTCTTCTGGGAACGGGATCATTTTCACTTCTGAGCTATGACAGGGAGAAAGTGAATGAAGAAGTCAAACCGCCACCTTCTTATATGCGCTGGCCTCATATGAAAGCAAATCAGGTTCACGGGCTAAGTTTGAGGGAAATCGGGGGTGGTTTTCCAAGACATCACCGTGCACCGTCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCTACGATGGTGCAGAAGATGCAAAATATCAAGAGAGTTAGAGGACACCGTAATGCTGTTTATTGTGCTATACTTGATCGGTCAGGAAGATATGTTATTACTGGTTCAGATGATCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATAGTTTGGCCAGTTGCCGTGGACACGATGGTGATATTACTGACTTAGCTGTGAGTTCAAACAATGCTGCAGTTGCATCCTCATCAAATGACTGCATTATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCCGTTTTGCGGGGGCATACCGGAGCTGTTACAGCCATTGCCTTTAGTCCCAGGCCTAATGCAGTTTACCAGCTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGAAATACCCAGTCAAGTCCAAGATTATATGTTCCAAAGCCTTCTGATTCTGTTGGAAGGAGCAGCGGCCCATCCTCAAATACAATGccacaaaatcatcaaatttttTGCTGTGCATATAATGCTAATGGAACTGTCTTCGTCACTGGTAGCTCTGATAATCTTGCCAGGGTCTGGAATGCTTGTAAACTTAATACGGAAGATGCTGACCAACCAAATCATGAGATAGATGTACTATCTGGTCATGAAAATGATGTAAACTATGTGCAATTTAGCGGATGTGCTGTAGCATCTCGATTTACCACAACAGAAACTTGGAAGGAGGATAATATTCCCAAATTTAAGAATTCCTGGTTGAATCATGATAATATTGTTACCTGCTCTCGTGATGGAAGTGCTATTATATGGATCCCAAAATCACGCAGGTCTCATGGGAAAAGTGGTCGCTGGACTCGAGCATATCATCTCAGAGTTCCACCTCCACCTATGCCTCCACAACCTCAGAGAGGTGGTCCACGCCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGCTTTGTCCTTGCAGCTATTATGGATTGCAGAATCTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTGCACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTTAATCCGCGGATAGCAATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGCGTGCCTATCAGGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCGGATGGGACATCAATTATACTATCTGATGATGTTGGtcaactatatatattaaacacGGGTCAAGGTGAATCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGGCCTCTCATTCAAGACACACATGGTAATGTACTTGACCAGGAAACTCAGATGATTCCTTATCGACGTAATATGCAAGATTTGCTTTGCGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCGGAGACGACTTGGAGCTTTCGGCCAGGAATGGCGCCCGTCATCGCTAAAGTTTGCTGTTGGCCCTGATTTCAGTCTGGACCCAGAGTATCATATGGTTCCATTGGCTGACTTGGACATGCTTATAGAACCACCACCAGAGTTTATAGATGTTATGGATTGGGAGCCAGAAATTGATGTGTTTGCTAATGATACCGATTCAGAATATAATTTAACTGATGATAGTTCTTCCCGGGGTGAGAAAGGATGTTCAAGCTCCAATGCCTCTGGTGATGATCCTGGTTGCAGCACAGATAACAGTGACAATGAAGATATTCACATGGATTCCATTCGTAGATCGAAGAGGAAAAAACAGAAGACCGGAATTGATATTATGACTTCTTCTGGGAGACGTGTTAAAAGAAGGAATTTGGATGAGTGTGAAGGCAATGTTCACAGTAGTAGCCGGAGTAGGAAGCGAAAAGGTGGACAGAAATCATCAAGGAGGAAATCTTCCAAATCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCtgaatttattctcaaaaattaCAGGTGGACCaattgaaggagaagaagataGTTTGGTTGGTGATTCTTCAGATAGTGACTCAACATTGCAAGAGTCTAATATAGACAGTGAAGAATCTGGTAGAGCTTCCCAAAATGACCAACGGAATAATTCCAAGGGAAAGGAAGTATTACTGTATGAATCAGAGGACACAAAATCTCATGAATTGACCGAGAGTCATGTAAACAGAAGGAGGTTGGTCCTCAAATTTCCAATTCGGGGTTCATCTAAACCTGCACATGAGTTTGAGAACCAGGCCGGGATGATTGGCTCATCGTCAAAAACTGCTCAAGAATCCCCTGATTTTAATGGGAACAGACCAAGTTCTACAGAGCAAGGATATCGTTTTGGCAATGGAAGTTACTCTTCAATTGAAAGAACAGATCAAGTAAATGTAGACTTACTAGAGAAAATTAGATGGGGGGAGGTTAGGGCTCGTTCATCTAAACCTCTCAGAGTGAGAGAAGCTGTGCCACCAGGTCCAAATCCCAACTCTTTGAAATGTCCTAACCATCTCAATGAAaacgaaaatgaaaatgaaaatgttagTACTGGGCATGAGAAAGAGGACAAGGACTTCAGCAGTACATCAACCCCTGCTTTAGAAATCCAAAATGATGATAAGGTAGATAGTTTGAcagaaataaatgaaaattgtgCTGGTACTACCTCTCAGCCATTTAATCCTACTGGGAATGGTGAACCACTCACAGCTTCCAGCAATTACAGGGATCAAGATGAATCACTAGTTTCTGCGGGCATGACTCCGCAGGATACTATCGTATCTCTCGGCCATAGTGGGGTTGACCAACTACCTGAACCAAATATTGGTTTTCCTTCTGTTTCAACAAAGCTGAGGTCTAAAAGGGGTGCGAGGAATCCTGAAAGTCCATGTAAGCATGAGACAAAATCATCAGTGCTAAAGAATATTGCATCTAGCTGTAAtgctgataataatttgaacaaCGAAGAGCATGTGGTTGTGGTTAAGGATGACAACAATACTAGACTAACATCTAATCAGAGAGAAAATGATGCTCAAGAAGTTGATGCTCAGGTTAAACAAGTTAGTACTTCACATGATTCACTAGAACCACATTCAAATAGAGATAAAATGTTCAAAGCTGTTTATAGAAGATCAAGATCACATAGGGCTGTGACTAATTTAGCTGATGGTAGTGGAATGGGAGAATCCACTTCAAATGGGAGCAACAGTAATCTTAATGTGGCAGTGGACAGTAATGGCACAAATGAAACTCTTCATACCAATGGTTCCCTTGAGTTGGAACTAGATACTCGTGTCCCAAATAATGAGCAGAGTAATCTTAAAGTGCGGCAAAGAAATGGATCTTGTATGGTTGGAATTCCTCAGAATGTTTCTCCAAATAAAGGAAAACTCACAGAAGAAAGGGGTTCTAATTCAAATTTGACTGTTGGTTTGAGGTCCACTAGGAATCGGAGGTCTACTTATAATATCCGTGAGACTAGTCCTGTAAATAGAAGGAAATCACTACAATCAACTGTGAAGGGATCCTGGTTGCTGTTATCCACACATGAGGAAGGATGTAGATATATTCCTCAACAGGGAGATGAAGTGGTGTATTTAAGACAGGGACACCAGGAATATATAGAATATAGCCGTAAAAGAGAATCGGGGCCTTGGGTGTCACTTAAGGAACATCTAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTCGAGTATTCTCACGTTCCAGGGTCGGGTGATAGCTGCTGCAAAATGACCCTCCAGTTTGTAGATTCAAATTCAAGTGTTGTTGGcaaaacttttaaattaacCCTACCTGAAGTGACCAGTTTCCCTGATTTTCTTGTTGAAAGAACTAGGTTTGATGCTGCTATCCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAATTCCTCTGGTAATTGGTGGGAGGGTCGAATTCAGTTTGTGAAAGCCAAATCTTCTGAATTTCCAGACAGTCCATGGGAGAGATATAGTGTTCGGTACAAGAATGACCTCTCTGATGAACATTTGCATAGTCCTTGGGAGCTTTTTGACGCTGATACTCAATGGGAACAGCCACATATTGATGATCACACAAGAAATAAACTTCTATCTGCTCTCGCCAAGATACAGCAGTCAGGCAACACCCTTCAGGATCGTTATGGACTGCATGaactgatgaaaatttcaaataagTCAAAATTTACGAACAGATTTCCTGTTCCTGTGTCTATTGAATTGATAGAATCAAGATTGGAGAATAATTACTACCGAAGTTTGGAGGCACTGAAGCATGATGCCTCAATTCTACTGTCCAATGCCACCTCGTTTTTTGAAAAGGATGCAGAGATGACTACCAAAATTAAACGTCTATCAGAGTGGTTCGCTCGGACATTATCATCTTCATAG 5178 0.4063 MRDMALQKYVPSGDAPTVNLKHLSFSSKVPEKTQSDVANQNHEMDVNVDLREVYFLIMHFLSGGPCQKTYLQFRNELLENQLLPRRYHAWYSRSGACSGVIQDDGQSFPLGYNKLVERYPHIEKDHLVKLLKQLLLNKAPLSPGLSTGNAPNAADVPTLLGTGSFSLLSYDREKVNEEVKPPPSYMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAILDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHDGDITDLAVSSNNAAVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARNTQSSPRLYVPKPSDSVGRSSGPSSNTMPQNHQIFCCAYNANGTVFVTGSSDNLARVWNACKLNTEDADQPNHEIDVLSGHENDVNYVQFSGCAVASRFTTTETWKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGVPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQMIPYRRNMQDLLCDSAMIPYPEPYQSEFQRRRLGAFGQEWRPSSLKFAVGPDFSLDPEYHMVPLADLDMLIEPPPEFIDVMDWEPEIDVFANDTDSEYNLTDDSSSRGEKGCSSSNASGDDPGCSTDNSDNEDIHMDSIRRSKRKKQKTGIDIMTSSGRRVKRRNLDECEGNVHSSSRSRKRKGGQKSSRRKSSKSKSSRPQRAAARNALNLFSKITGGPIEGEEDSLVGDSSDSDSTLQESNIDSEESGRASQNDQRNNSKGKEVLLYESEDTKSHELTESHVNRRRLVLKFPIRGSSKPAHEFENQAGMIGSSSKTAQESPDFNGNRPSSTEQGYRFGNGSYSSIERTDQVNVDLLEKIRWGEVRARSSKPLRVREAVPPGPNPNSLKCPNHLNENENENENVSTGHEKEDKDFSSTSTPALEIQNDDKVDSLTEINENCAGTTSQPFNPTGNGEPLTASSNYRDQDESLVSAGMTPQDTIVSLGHSGVDQLPEPNIGFPSVSTKLRSKRGARNPESPCKHETKSSVLKNIASSCNADNNLNNEEHVVVVKDDNNTRLTSNQRENDAQEVDAQVKQVSTSHDSLEPHSNRDKMFKAVYRRSRSHRAVTNLADGSGMGESTSNGSNSNLNVAVDSNGTNETLHTNGSLELELDTRVPNNEQSNLKVRQRNGSCMVGIPQNVSPNKGKLTEERGSNSNLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSTVKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIEYSRKRESGPWVSLKEHLRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDSNSSVVGKTFKLTLPEVTSFPDFLVERTRFDAAIQRNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKNDLSDEHLHSPWELFDADTQWEQPHIDDHTRNKLLSALAKIQQSGNTLQDRYGLHELMKISNKSKFTNRFPVPVSIELIESRLENNYYRSLEALKHDASILLSNATSFFEKDAEMTTKIKRLSEWFARTLSSS 1725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01750 1725 PANTHER WD REPEAT DOMAIN 9 19 1723 - -
Tsu07g01750 1725 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515
Tsu07g01750 1725 CDD Bromo_WDR9_I_like 1597 1725 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 1365 1389 - -
Tsu07g01750 1725 SUPERFAMILY Bromodomain 1648 1722 IPR036427 GO:0005515
Tsu07g01750 1725 Pfam Bromodomain 1657 1710 IPR001487 GO:0005515
Tsu07g01750 1725 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 1128 1153 - -
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Tsu07g01750 1725 Gene3D - 1624 1725 IPR036427 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 366 388 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 1180 1214 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 1059 1153 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 990 1034 - -
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Tsu07g01750 1725 Gene3D - 390 523 IPR015943 GO:0005515
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 362 - -
Tsu07g01750 1725 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 19 1723 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 847 867 - -
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Tsu07g01750 1725 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Tsu07g01750 1725 SMART WD40_4 432 497 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 317 359 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 275 314 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 571 611 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 233 272 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 530 568 IPR001680 GO:0005515
Tsu07g01750 1725 SMART WD40_4 382 420 IPR001680 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 785 955 - -
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 922 952 - -
Tsu07g01750 1725 ProSiteProfiles Bromodomain profile. 1665 1708 IPR001487 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 785 815 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 1093 1108 - -
Tsu07g01750 1725 Gene3D - 217 389 IPR015943 GO:0005515
Tsu07g01750 1725 Gene3D - 533 667 IPR015943 GO:0005515
Tsu07g01750 1725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Tsu07g01750 1725 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Tsu07g01750 1725 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Tsu07g01750 1725 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Tsu07g01750 1725 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Tsu07g01750 1725 Pfam WD domain, G-beta repeat 393 420 IPR001680 GO:0005515
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 868 888 - -
Tsu07g01750 1725 MobiDBLite consensus disorder prediction 999 1034 - -
Tsu07g01750 1725 CDD WD40 236 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01750 Tsu-Chr7 17254078 17271894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01750 232 451 Miscellaneous Gene Families AT5G08390 22.172 4.36e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01750 K11797 - gmx:100818665 2694.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01750 07 17254078 17271894 Tsu07g01750 07 17254078 17271894 ECH