Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01724 ATGCTTGATTTTGACTTCCTTTGCGGAAGGGAAACACCATCAGTTGCTGGAATAATTAATCCGGGTTCTGAAGGatttcaaaaactattttttggTCAGGAGGAAATTGCCATCCCAGTTCATGCTACTATTGAAGCAGCTAGTGCTGCACATCCTACCGCTGATGTCTTCATCAATTTTGCATCGTTTAGGAGTGCTGCTGCATCATCCATGTCTGCTTTGAAACAGCCTACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACGCAAAGCAATTGATTGCATATGCCCGTGCAAACAATAAGGTCGTTATTGGCCCAGCCACTGTTGGAGGCATTCAAGCTGGGGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATCCACTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACTCCATTGCCCGTGTAACTGATGGCATCTATGAAGGCATTGCTATTGGAGGGGATGTTTTCCCAGGTTCCACTCTATCTGACCATGTTTTGCGGTTTAACAACATACCACAGGTTAAAATGATAGTAGTACTTGGAGAGCTTGGTGGGCGTGATGAATATTCCTTAGTGGAAGCCCTAAAACAAGGGAAAGTGACCAAACCTGTTGTTGCCTGGGTTAGTGGAACCTGTGCAACACTCTTCAAATCGGAAGTACAATTTGGCCATGCTGGAGCTAAAAGTGGTGGTGACATGGAGTCTGCTCAAGGAAAGAATCAGGCACTAAGAGAAGCTGGAGCTGTTGTTCCTACTTCGTACGAAGCTTTTGAAACTTCGATTAAAGAAACATTTGACAAATTGATTGAAGCAGGGAAAATAACACCTGTGAAGGAATTCACTCCTCCACAAATCCCTGAGGACCTTAGCTTTGCAATCAAGAGTGGGAAAGTCCGTGCTCCAACTCATatcatttccaccatttctgaTGATAGAGGTGAGGAGCCGTGCTATGCTGGTGTACCCATGTCTTCCATTATTGAAAAGGGTTTCGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGAAGCCTACCCCGTTACTGTACTCAATTTATCGAGATATGCATCATGTTATGTGCCGATCATGGTCCTTGTGTCTCTGGCGCTCACAATACTATTGTGACAGCGAGGGCTGGGAAGGACCTAGTTTCAAGTCTTGTTTCAGGTTTGCTTACAATCGGTCCACGATTTGGGGGTGCCATTGATGATGCCGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACACCTTACGAGTTTGTTGAAGGTATGAAGAAGAAGGGAATTCGTGTGGCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAAAGAGTTGAGCTATTACAGAAGTTTGCACGCACACATTTTCCTTCAGTGAAATACATGGAATATGCTGTTCAAGTTGAAACCTACACTCTCACCAAGGCAAATAATTTAGTTCTTAATGTAGATGGGGCAATTGGATCTCTTTTCTTAGATCTTCTTGCTGGTAGCGGAATGTTCACCAAGCAAGAGATTGACGAAATTGTGGAGATTGGATATTTGAATGGGCTCTTTGTGTTGGCCCGCTCCATTGGTCTGATCGGGCATACCTTTGACCAGAAGAGATTGAAGCAACCACTATACCGCCACCCATGGGAGGATGTACTCTACACAAAGTGA 1752 0.4326 MLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAASAAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDAKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCATLFKSEVQFGHAGAKSGGDMESAQGKNQALREAGAVVPTSYEAFETSIKETFDKLIEAGKITPVKEFTPPQIPEDLSFAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGFGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVEGMKKKGIRVAGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01724 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 111 IPR036291 -
Tsu07g01724 583 Pfam Citrate synthase, C-terminal domain 374 573 IPR002020 GO:0046912
Tsu07g01724 583 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 583 - -
Tsu07g01724 583 Gene3D - 113 298 IPR016102 -
Tsu07g01724 583 SUPERFAMILY Citrate synthase 105 579 IPR036969 GO:0046912
Tsu07g01724 583 Pfam CoA-ligase 149 273 IPR005811 GO:0003824
Tsu07g01724 583 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 149 178 IPR033847 -
Tsu07g01724 583 PANTHER ATP-CITRATE SYNTHASE 1 583 - -
Tsu07g01724 583 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 234 250 IPR017440 -
Tsu07g01724 583 Gene3D - 426 527 IPR016143 -
Tsu07g01724 583 CDD CCL_ACL-C 344 581 - -
Tsu07g01724 583 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 143 168 IPR017866 -
Tsu07g01724 583 Gene3D Citrate Synthase, domain 1 375 573 IPR016142 -
Tsu07g01724 583 Gene3D - 1 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01724 1 583 Acyl Lipid Metabolism Gene Families AT3G06650 92.453 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01724 K01648 - gmx:100795745 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01724 07 16992926 16997260 Tsu07g01724 07 16992926 16997260 ECH