Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01663 ATGTTCTTCAGTGGCGATCCTTCTAATCGTAAACGCGTCGATTTAGGTGGTCGAAGTACGAAGGAAAGAGATAGAAAGAATCTTCTAGAACAAACTCGATTGGAAAGAAATCGACGGTTGTGGTTGCGTCAGCAGAACTCTGCTGCACTTCGGATTCAGAAATGCTTCAGAGCAAAAAAGGCTGTCAGAGCGGAACACTCTAAGCTGCGACAGAAATTCCTTAAAATCTATGGGACGAACTGCCTTAATGTTGACAGGAAAGCTTTTGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGTGGAAAACCATGATGATTTTTTAGTTCTTGTGCAAATTTGCCGATTGATTCTACAGTTTGTTCAAGAAAGTGGGGATGCTGTGAGACTTTTTGCCGGTGAAGATTACTCATCCATATGCGCTTTTGTGAACTGCCGAGTGAAGAAGCTTGCATATAATTGTATTCGTGCAGTACATCATAACAGAAATCAGTTAAAGGATCAACTTTTATTGACTTTAAAGGAGTCTAATGCATCAGCTATTCCTTTATTGGAAGTTTTATTACTGTTGATAGACCTCAAACTGCCATGGAGCTGTAAGATAGTAGGATATCTCTCTCAAAACAATGGATTCGGCCTACTTAGAGATATTATTCTGACAGGAAAGGATAATGCAGAAAAATGCATTGGATCGTCTTTGGAGTGTGTGCTTACAGGTGTAATGTGCCACATTGGTCAGAATCCATGCATCTGTTCAGACATTGATCCAAGATATAGCTTCTCATCGCAGATCCTTACAATTCCTTTCTTATGGCACGTTTTTCCAAACTTAAGACAGGTTTTTGCAAGAAAGGGCATGGGCCAGCATTACATTCATCAAATGGCGACATTTGTGCCAAATCTGATCAATTTTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGTGTTGCTTTGTCTCAACCCGACTGTTCATTCGATATGGCCATAGACCTTGCAGCTGTTACTACATCTTTACTGGAGGCGCATCCCTCTCTGACAAGATCTGATAGTAGAGAAAATTCTATGATCGCTGAGGATGATATGACTGGCGATGAAATCATGGAAGTAGCTCTGGATAGAAAATTAGATCAACAAATTTGTAATTCCATAGATACTCGCTTCCTTCTCCAACTGacaaatatattatttagagATATTTCATCTGCAAATGGGCCAAATGATATGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTCGCCTACAGAACTGACCTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAGAACAAAAAATGGTCAACTTTGTCTGAGCGGTTATCATACCTCTCAGGGGATGCCCCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTTATGATAGTTGATAATGAGGAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATCAGCAGCCTCATCATTCTATTGAAGCAGGCTCTGTGGCAGCTACTGTGGGTAAATCATACCTCATCTGCTAATTCAGTTAGGTCTAATGCAGTTAGGACAAGCAGTAAAAAGCTTTCTATCGAAGGCATTCAACAGAGGGTTAGCATAGTCGTCTCTGAGCTCCTGTCCCAGCTCCAAGATTGGAACAATAGACGACAGTTTACGTCCCCCAGTGATTTCCATGCTGATGGGGTGAATGACTTTTTTATCTCTCAGGCTGTTATAGAAAATGCACGAGCAAATGAAATTTTAAAGCAGGCCGCTTTCTTAATACCATTTACAAGCAGGGTTAAAATTTTCACCTCTCAACTAGCTGCAGCTAGGCAAAGACAAGGATCTCCAGCTCTATTTACTAGAAACCGGTTCAGAATAAGACGTGATCATAGTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTTCGAGGACTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAAGCTGGAATAGATGGAGGTGGAATGTTCAAAGATTTCATGGAGAACATCACACGGGCTTCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCAAATCCTGGATCTGGAATGATACATGAACAACATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTCGAAGGGATTCTTGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACCTGCCTTCCTTGGACCCTGAATTATATCGCCATCTTATCTTTCTAAAGCGTTATGAGGGTGACATTTCGGAGTTAGAACTATACTTTgttatattaaataatgaataTGGAGAGCAAACAGAAGAGGATCTTCTTCCGGGAGGAAAGAACCTGCGTGTCACAAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCTTGAGAGGATTTCAGCTTCTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGATCACTTGATAGCTTGGATGTTGATGATTTGCGGCAGCATACGAATTACGCAGGAACCTATCATAGCGAGCACAATGTGATTGAGATGTTCTGGGAAGTACTCAAAGGATTTTCAATTGAAAACCAGAAGAAATTCTTAAAGTAA 2847 0.3973 MFFSGDPSNRKRVDLGGRSTKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRAKKAVRAEHSKLRQKFLKIYGTNCLNVDRKAFGPDSDFLRQFLYFFNVENHDDFLVLVQICRLILQFVQESGDAVRLFAGEDYSSICAFVNCRVKKLAYNCIRAVHHNRNQLKDQLLLTLKESNASAIPLLEVLLLLIDLKLPWSCKIVGYLSQNNGFGLLRDIILTGKDNAEKCIGSSLECVLTGVMCHIGQNPCICSDIDPRYSFSSQILTIPFLWHVFPNLRQVFARKGMGQHYIHQMATFVPNLINFLPKDISDEFPTYACLLGNILETGGVALSQPDCSFDMAIDLAAVTTSLLEAHPSLTRSDSRENSMIAEDDMTGDEIMEVALDRKLDQQICNSIDTRFLLQLTNILFRDISSANGPNDMEVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTDLVPMLWNFMKRCHENKKWSTLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDISSLIILLKQALWQLLWVNHTSSANSVRSNAVRTSSKKLSIEGIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRVKIFTSQLAAARQRQGSPALFTRNRFRIRRDHSLEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGMFKDFMENITRASFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRYEGDISELELYFVILNNEYGEQTEEDLLPGGKNLRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQLLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGTYHSEHNVIEMFWEVLKGFSIENQKKFLK 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01663 948 ProSiteProfiles HECT domain profile. 682 948 IPR000569 GO:0004842
Tsu07g01663 948 PANTHER BNAC01G43970D PROTEIN 1 948 - -
Tsu07g01663 948 SMART hect_3 680 948 IPR000569 GO:0004842
Tsu07g01663 948 Pfam HECT-domain (ubiquitin-transferase) 718 948 IPR000569 GO:0004842
Tsu07g01663 948 Gene3D Hect, E3 ligase catalytic domains 663 901 - -
Tsu07g01663 948 Gene3D Hect, E3 ligase catalytic domain 905 948 - -
Tsu07g01663 948 Gene3D Hect, E3 ligase catalytic domain 787 866 - -
Tsu07g01663 948 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 948 IPR044611 GO:0000209|GO:0061630
Tsu07g01663 948 SUPERFAMILY Hect, E3 ligase catalytic domain 656 948 IPR035983 GO:0004842
Tsu07g01663 948 CDD HECTc 661 948 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01663 Tsu-Chr7 15746427 15768035 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01663 K10589 - gmx:100787467 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01663 07 15746427 15768035 Tsu07g01663 07 15746427 15768035 ECH