Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01662 ATGTCACGCCATCGTTATCCTGTAGAAAGTTGTCGAGTTTTTGAACGAACAACTACAACAAAGCTGCAGACAGCCCTAACATCTTCCAAAGAAGATGACAATGATGAGGCTGTGAAGGCCAATGGAAATGGAACTGATGTTTCTAATGTAGATAAAGAGAAGCAGGGATCCCGAAAAGGTGGGAAGTCATATGCCACTTTGAAAATTATCCTTGGAGAGGCACTCGGTTATGGACCTGCCCTTTCTGAACACATGATATTAGATGCTGGTTTAATCCCCAATGAGAAAGTACCCAAAGATAAAACGTGGGATGATGCCACTGTTCAGGCATTGGTCCAAGCAGTTGCAAAGTTTGAAGATTGGATGCAGGATATCATTTCAGGTGAAATAGTTCCAGAAGGATACATTTTGatgcaaaacaaaaatttgGCGAAGGATTCTTCTGTATCTCAACTTGAAAGTCTTAAACAGATCTATGATGAGTTCTGCCCCATCTTACTTAACCAGTTTAAGTCGAGGGAACATACAAAGTTTGAGACATTTGATTTAGCCTTAGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAAGCCAAAGAGAACTCAGCTGTTCAGAAACTTAATAAGATACGCAACGATCAGgAAAATCGAGTGCACACTTTGAGGAAAGAAGCAGATCACTGTATTCAAATGGCAGAATTGATAGAATATAATTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTATCTCTTGCTAAGGGTATGAGTTGGGATGACCTTGCCCGGATGGtgaaggaagaaaagaaagcCGGAAACCCAGTAGCTGGTCTTATTGACAAGCTCCATCTTGAAAGAAATTGCATGACTTTGCTGTTGAGCAACAATCTCGACGAAATGGATGATGACGAGAAGACACTCCCTGCAGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCTAATGCTCGGAGGTGGTATGAGCTGAAGAAAAAACAAGAGAGCAAACAGGAGAAGACTATAACTGCCCATGAAAAAGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAGTCAGGAAAAAACTGTTGCCTCAATTTCGCATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGATTATCAGTGGACGTGATGCCCAGCAAAATGAGATGATAGTGAAACGTTATATGTCAAAAGGAGATCTGTATGTGCATGCTGAACTGCATGGAGCTTCTAGTACAGTTATTAAGAATCACAAACCTATGCAGCCAGTTCCGCCGCTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATGGTTACCAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACTGGGGAATATCTGACAGTGGGGAGTTTCATGATACGTGGAAAGAAAAATTATCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTTCTATTTCGCTTGGATGAGAGCTCACTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAGGAAACAATAGATGATAATGTAGAAACTGGCCCTATTGAAGAACAATCTGATTCAGAGTCTGAGAAGGATGTTGCTGGTGAAGTATCTGCTGCAGACTCAGAAAGGAATGGTAAGCCATCTGCAGACTTTCTTGCCGACACATCTCAAACTAGTCTGGACACAGTTAATGCCAAAACTACAGTGTCAGATGATTTTCTTGCAAAAGATACAAGTGCGAAAAATATGCTTGATAGTGAGAAATTACCTGACGTCGGTGGAAATGGCTTAGCATCTGTCTCTCCTCAGCTTGAAGAACTTCTTGATCAAGCTCTGGGACTTGGATCTGTTgccaaatcaaataaaagttATGGAGCTGAGAAAACTCAGGTTGATTTAAGCAGTGAGCACGATATTGAACCGAGCAAACCTGCAGTAAGGGATAAACCGTATATATCAAAAGCTGAGAGAAGAAAGCTTAAAAATGAACCGAAACATGGAGAAGCATATCCAAGCGATGAACATGGAAAGgacaaatcaaaaacaaaagataTTTCTGGTAATCTGCATGCAAAAGATGCTCAAAATTTGAAGACAGGTGGTGGTAAAAAAGTCAGCCGTGGACAAAAGGGAAAGCTTAAGAAAATAAAGGAGAAGTATGCTGACCAAGATGAGGAAGAAAGGAGCATCCGAATGACATTATTGGCCTCTTCTGGGAAACCAATCAATAAGGAAGAGACATTACCTGTAAATGAAGCCTCggacaaaggaaaaaaatctGACAGTGGTCCTATAGATGCTCCAAAAATATGTTACAAGTGTAAGAAGGTGGGTCATTTATCTCGGGATTGTAAGGAGCAATCAAATGATCAGTTGCACAGTCATGCAATCAGTGAAGCTGAGGAAAATGCCAACACAAGTGCTTTAAACACTTCCATAGATGATAGAGTGGCAATGGAAGAAGATGATATTAATGAAataggagaagaagagaaagaaaaactgAATGACGTGGATTACTTGACAGGGAATCCACTCCCAAATGACATTCTCTTATATGCTGTTCCTGTATGTGGTCCATACAATGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATTCCCGGACCTGTGAAGAAAGGGAAAGGTTCTATTTGTTTTACATTTAACTTTACATCATCAATCCATTATGTTTCTGcttaa 2787 0.3918 MSRHRYPVESCRVFERTTTTKLQTALTSSKEDDNDEAVKANGNGTDVSNVDKEKQGSRKGGKSYATLKIILGEALGYGPALSEHMILDAGLIPNEKVPKDKTWDDATVQALVQAVAKFEDWMQDIISGEIVPEGYILMQNKNLAKDSSVSQLESLKQIYDEFCPILLNQFKSREHTKFETFDLALDEFYSKIESQRSEQQHKAKENSAVQKLNKIRNDQENRVHTLRKEADHCIQMAELIEYNLEDVDAAILAVRVSLAKGMSWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPADKVEVDLALSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPMQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNYLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEETIDDNVETGPIEEQSDSESEKDVAGEVSAADSERNGKPSADFLADTSQTSLDTVNAKTTVSDDFLAKDTSAKNMLDSEKLPDVGGNGLASVSPQLEELLDQALGLGSVAKSNKSYGAEKTQVDLSSEHDIEPSKPAVRDKPYISKAERRKLKNEPKHGEAYPSDEHGKDKSKTKDISGNLHAKDAQNLKTGGGKKVSRGQKGKLKKIKEKYADQDEEERSIRMTLLASSGKPINKEETLPVNEASDKGKKSDSGPIDAPKICYKCKKVGHLSRDCKEQSNDQLHSHAISEAEENANTSALNTSIDDRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKKGKGSICFTFNFTSSIHYVSA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01662 928 Pfam NFACT N-terminal and middle domains 68 368 - -
Tsu07g01662 928 MobiDBLite consensus disorder prediction 777 791 - -
Tsu07g01662 928 MobiDBLite consensus disorder prediction 656 791 - -
Tsu07g01662 928 SMART c2hcfinal6 798 814 IPR001878 GO:0003676|GO:0008270
Tsu07g01662 928 MobiDBLite consensus disorder prediction 659 716 - -
Tsu07g01662 928 MobiDBLite consensus disorder prediction 743 759 - -
Tsu07g01662 928 ProSiteProfiles Zinc finger CCHC-type profile. 799 814 IPR001878 GO:0003676|GO:0008270
Tsu07g01662 928 SUPERFAMILY Retrovirus zinc finger-like domains 791 817 IPR036875 GO:0003676|GO:0008270
Tsu07g01662 928 Coils Coil 202 229 - -
Tsu07g01662 928 Gene3D - 794 844 - -
Tsu07g01662 928 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 911 - -
Tsu07g01662 928 MobiDBLite consensus disorder prediction 525 581 - -
Tsu07g01662 928 Pfam Zinc knuckle 798 814 IPR001878 GO:0003676|GO:0008270
Tsu07g01662 928 MobiDBLite consensus disorder prediction 24 59 - -
Tsu07g01662 928 MobiDBLite consensus disorder prediction 551 565 - -
Tsu07g01662 928 Pfam NFACT protein C-terminal domain 859 911 IPR021846 -
Tsu07g01662 928 PANTHER - 1 911 - -
Tsu07g01662 928 Pfam NFACT protein RNA binding domain 386 497 IPR008532 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01662 K24971 - gmx:100803745 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01662 07 15732707 15741037 Tsu07g01662 07 15732707 15741037 ECH