Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01661 ATGGCTATGGCATCTCTGACTCAACAACTCAATGGTCTCAAGTGGACCCCACTCCTATACAAACCAACACAACCACTGAAACAAAAACGCGGTGTTCTTCCTATTGTATGTTCCATTGCAATTTCAAGCACACAGAACAAAGAGAGATCAAAACTTTCAAACCTTTTTGAACATGCTTATGAGAGTTGCCGTACTGCTCCATTGCAAGATGTTCCTTTCACTCTCGACCAATTCACTCAAACTATTGAAAAATATCATCAAGACACTGAAATTGGTAACAAGGTTACTGGCATTGTGTTTGGCTCTGATGCTAGTGGAGCTTTTGTTAACATTATCTCAAAATCTGCAGCATACTTGCCACTAAATGAGGCATGTATCCGCAGAATTAGGCATGTAGAAGATATAGGCTTAATTCCTGGCGCGAAAGAGGAGTTTGTAATCATTGAAGAAAATGAAGCTGATGGTTACCTCTTAAGTTTAAGATCTGTCCAGTTTGACCTTGCATGGGAACGATGTAGGCAACTTCAGACAGAAGATGTTGTTGTCAAGGGTAAGCTTATTGATTCAAATAAAGGTGGTATGGTGGCTGAAGTTGAAGGCCTTAAAGGGTTTGTTCCATTCTCACAGATGTCAACGAGAATGCCGGGAGAAGAGATTATTGAGATGGAGATTCCTTTAAAGTTTGTGGAGGTTGACGAGGAAGAGTCCAGACTTGTCCTTAGCCACCGCAAAGCTGTGGCCGGCATCCAGGCACAACTAGGAATTGGATCAGTAGTCACTGGCACCGTGCAAAGCCTAAAGCCATATGGTGCCTTTATTGACATCGGTGGAATTAGTGGCCTCCTTCATGTCAGCCAAATCAGTCATGATCGTATATCTGATGTTGAAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATATTAAGTCATGATCGTGAGAGAGGCCGTGTAAGTCTTTCCACAAAGAAGTTGGAACCTACACCTGGAGACATGATTCGTAATCCAACGCTTGTCTTCGAAAAGGCGGATGAGATGGCTCAGACATTCAGACAAAGAATAGCGCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTAGGACCACTTGGTTCAGATTTGCCTCTAGAGGGATTGGATCTGAGTGAGGTACCCCCAGCTGAAGAATAA 1218 0.4335 MAMASLTQQLNGLKWTPLLYKPTQPLKQKRGVLPIVCSIAISSTQNKERSKLSNLFEHAYESCRTAPLQDVPFTLDQFTQTIEKYHQDTEIGNKVTGIVFGSDASGAFVNIISKSAAYLPLNEACIRRIRHVEDIGLIPGAKEEFVIIEENEADGYLLSLRSVQFDLAWERCRQLQTEDVVVKGKLIDSNKGGMVAEVEGLKGFVPFSQMSTRMPGEEIIEMEIPLKFVEVDEEESRLVLSHRKAVAGIQAQLGIGSVVTGTVQSLKPYGAFIDIGGISGLLHVSQISHDRISDVETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKADEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPLEGLDLSEVPPAEE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01661 405 SUPERFAMILY Nucleic acid-binding proteins 81 185 IPR012340 -
Tsu07g01661 405 PANTHER 30S RIBOSOMAL PROTEIN S1 3 405 - -
Tsu07g01661 405 Pfam S1 RNA binding domain 178 243 IPR003029 GO:0003676
Tsu07g01661 405 Pfam S1 RNA binding domain 255 324 IPR003029 GO:0003676
Tsu07g01661 405 Gene3D - 248 328 IPR012340 -
Tsu07g01661 405 CDD S1_RPS1_repeat_hs4 256 324 - -
Tsu07g01661 405 ProSiteProfiles S1 domain profile. 92 161 IPR003029 GO:0003676
Tsu07g01661 405 Gene3D - 172 247 IPR012340 -
Tsu07g01661 405 ProSiteProfiles S1 domain profile. 179 243 IPR003029 GO:0003676
Tsu07g01661 405 Coils Coil 341 361 - -
Tsu07g01661 405 SMART S1_6 254 324 IPR022967 -
Tsu07g01661 405 SMART S1_6 90 161 IPR022967 -
Tsu07g01661 405 SMART S1_6 177 243 IPR022967 -
Tsu07g01661 405 CDD S1_RPS1_repeat_ec2_hs2 179 243 - -
Tsu07g01661 405 Gene3D - 75 171 IPR012340 -
Tsu07g01661 405 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 3 405 - -
Tsu07g01661 405 SUPERFAMILY Nucleic acid-binding proteins 255 334 IPR012340 -
Tsu07g01661 405 SUPERFAMILY Nucleic acid-binding proteins 174 246 IPR012340 -
Tsu07g01661 405 ProSiteProfiles S1 domain profile. 256 324 IPR003029 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01661 K02945 - gmx:100806905 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01661 07 15725813 15729531 Tsu07g01661 07 15725813 15729531 ECH