Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01332 ATGAatcttcaaatttcaaataGCATCGATTCTTCACTTCAACTCCCAAAACCCTTCTTCTTCACCCAATTCCctcattcttctctttctcaaCGCATTCTCACAACTAAACCTCGCAAATGCAAACTCAGAATCACCGCTTCCAATTCTCTTTCAGTTTCATCTTCCAACGAACAAGACTCCGACTCAATTCAGCTATTCGAGCAACTGAAGGAATCTGAAAGGAAACGGGTGAATGAGTTGGAAGAACTGGAGAGAAAGGCTAATGTGCAGTTAGATAGGCAGCTTGTTATGGCTTCTTCATGGAATAGAACTTTGTTGACTTTGCGTGGAAAATTGAAGGGAACTGAATGGGATCCTGAAAATTCACATAGGATAGACtttagtgattttttgaaattgctTGACTCAAATAATGTTCGGTTTATAGAGTATTCTGATTATGGACAAACTTTATCAGTTATTTTACCATATTATAAGAATGGGAAAACATCAGGCGTTGAAGGGAATCCTAAGGATATTGTTTATCGGCGTCATGCAGTTGAACGAATGCCGGTTGATTGTTGGAATGATGTTTGGGGAAAGTTGCATCAACAAATTGTAAATGTTGATGTCATTAATGTAGATGCTGTACCTGCTGAAGTATACTCAACGGTTGCAACTGCAGTCGTATGGTCTATGCGTCTTGCCCTGGCTGTTGGATTTTATGTTTCCATTGATAATTTGATGAGACCAATATATGGAAAGTTTATACCTACTGATTTGGGAACTCCTCCTCCCACCCCACAAACTAAGGTGCCCGTCTTAAGAAGACAGGCACTTGGTTCTCTAGGCAAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAAAGGGAACTTCAAGAGATTGTCCGAATTTTAAAGAATGACGAGGAGTTTCAAGACAAAGGAATCTATTGTCCAAAAGGTGTACTTCTTCATGGACCCCCTGGAACTGGTAAAACTTTACTGGCTAAAGCCATCGCTGGTGAAGCAGGGTTGCCTTTTTTTGCTGCTAGTGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGACCTTTTTTCTAATGCAAGATCATTTGCACCTTCGATAATCTTTATTGATGAGATTGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGGTTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTCCTTGTGATAGGTGCTACAAATAGATTGGATATTATTGATCCTGCTCTTTTGAGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTACCTTTAAAAGATGGAAGGCTTGCCATTTTGAAGGTGCATGCTATGAATAAGTCTTTTCGctcagaagaagaaaaggatACTCTACTTAAGGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAAAATATACTGAATGAAGCTGGAATTTTAACGGCCAGGAAGGATCTGGATTACATCGGCCGTGATGAGTTGCTTGAGGCCTTAAAAAGGCAACAAGGAACATTTGAAACAGGGCAAGAGGATACTATAAAAATTCCTGAAGAACTGAGACTGAGATTAGCTTATAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAACCCAACCGCCCTTTTGTTGAGACTGATATAACATCTATTCGCAACCAGCCAAATATGTGTTATAATGAAGTTTCTGGAAAGGTTTTCTCTAGGAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTCGGGGCCGACAACTTGTCTTGGATGTCGGCAAATGCAACAGTAGAAGCTTCAAGGCTTGTAGAATTTTTGATTCTACAGACTGGAATGACTGCCTTGGGAAAAGCATATTACAGAAACGAAAGCGATCTTGTGCCTAATCTTGCAGTGAAGCTTGAAGCACTCCGAGATGAGTATATGCGTTATGGTACAGAGAAGTGTTCATCTGTGCTAAGAGAATACCATTCAGTGGTTGAGGCAATCACAGATATATTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCGTGTAGCTCAGCCATTTGTGAGTCCAATTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCTGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTTCGACCTTTGGAGCACCACGCCCTACGCAGACGCAAATTGTCAAGGATGACACATGGAAACTAGTAGATGATATCTGCGATAAAAATGTTCAAGATATTAAAGATGAAGCTTCAAGGGAGATTGAAGAGGAGAAAGAAAAGCCACAACTTTTGATGGCAAGTCATTTCCTCTGA 2508 0.3999 MNLQISNSIDSSLQLPKPFFFTQFPHSSLSQRILTTKPRKCKLRITASNSLSVSSSNEQDSDSIQLFEQLKESERKRVNELEELERKANVQLDRQLVMASSWNRTLLTLRGKLKGTEWDPENSHRIDFSDFLKLLDSNNVRFIEYSDYGQTLSVILPYYKNGKTSGVEGNPKDIVYRRHAVERMPVDCWNDVWGKLHQQIVNVDVINVDAVPAEVYSTVATAVVWSMRLALAVGFYVSIDNLMRPIYGKFIPTDLGTPPPTPQTKVPVLRRQALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTDFVEMFVGVAASRVKDLFSNARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDIIDPALLRKGRFDKIIRVGLPLKDGRLAILKVHAMNKSFRSEEEKDTLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQQGTFETGQEDTIKIPEELRLRLAYREAAVAVLACYFPEPNRPFVETDITSIRNQPNMCYNEVSGKVFSRKSDYINSIVRSCAPRVIEEEMFGADNLSWMSANATVEASRLVEFLILQTGMTALGKAYYRNESDLVPNLAVKLEALRDEYMRYGTEKCSSVLREYHSVVEAITDILLEKGQIKAEEIWDIYKSAPRVAQPFVSPIDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTQTQIVKDDTWKLVDDICDKNVQDIKDEASREIEEEKEKPQLLMASHFL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01332 835 Coils Coil 805 825 - -
Tsu07g01332 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 541 IPR027417 -
Tsu07g01332 835 SMART AAA_5 328 469 IPR003593 -
Tsu07g01332 835 CDD AAA 299 467 - -
Tsu07g01332 835 Coils Coil 64 91 - -
Tsu07g01332 835 Pfam AAA+ lid domain 496 536 IPR041569 -
Tsu07g01332 835 Coils Coil 492 512 - -
Tsu07g01332 835 Gene3D - 276 466 IPR027417 -
Tsu07g01332 835 ProSitePatterns AAA-protein family signature. 437 455 IPR003960 GO:0005524|GO:0016887
Tsu07g01332 835 PANTHER METALLOPROTEASE M41 FTSH 42 803 - -
Tsu07g01332 835 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 42 803 - -
Tsu07g01332 835 SUPERFAMILY FtsH protease domain-like 557 737 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g01332 835 Pfam ATPase family associated with various cellular activities (AAA) 332 466 IPR003959 GO:0005524|GO:0016887
Tsu07g01332 835 Gene3D Peptidase M41 550 737 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g01332 835 Gene3D - 468 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01332 Tsu-Chr7 11662654 11671493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01332 293 576 Miscellaneous Gene Families AT3G47060 46.831 1.30e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01332 - - gmx:100804743 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01332 07 11662654 11671493 Tsu07g01332 07 11662654 11671493 ECH