Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01306 ATGAAGATAAAATCACATTCTTCATTTTGCTTCACGATTCTCATTATAGCTTTTAGCAGCATACAAATATGTTTAGCAGACTGTGATAATATACAGGACACATGCCCCACATCACCATCAGAAAAACATACCACATCCATCAATGGTCTCACCTGTAACAACCCAGCTAACAAATCTGCTCATGATTTCAAAACCATGGAATTAAGCAAATCTGGTTCAAAAGACAAATTTGGTTCATCAATCAACATTGTGACAGCTTCAAAGTTCCCTGGTCTCAACACTCTTGGTATCTCAATTGGTAGAACAGACATTGAAGTGGATGGGCTTGTGAACTTCCATAATCATCCAAGAGCTAGTGAGATGATCTTTGTTAAGGAAGGTGGATTAGATGTTGGGTTTCTTGATACACAAAACAAGCTTTTCCAGAAGGCTTTGAAAGAAGGTGATGTGTTTGTGATCCCTAAGGGCCTATTCCATTTCTTTCTAAACCGTGGTGTAGAAGTTACAACTGTGTTATCTGTGTTTAATAGCCAAAATCCAGGTTTGGGATCTCCTACAGCCACACCTTCTTCTGAATCAGTTGAGAAGATAAAGAAGCTTATATCACTTTCTGAGTCAGAAGTTGACAGTCTTAATGATTTGAGTTTGGCTTTGTCTGAGATTATTTACAGTTAA 675 0.3778 MKIKSHSSFCFTILIIAFSSIQICLADCDNIQDTCPTSPSEKHTTSINGLTCNNPANKSAHDFKTMELSKSGSKDKFGSSINIVTASKFPGLNTLGISIGRTDIEVDGLVNFHNHPRASEMIFVKEGGLDVGFLDTQNKLFQKALKEGDVFVIPKGLFHFFLNRGVEVTTVLSVFNSQNPGLGSPTATPSSESVEKIKKLISLSESEVDSLNDLSLALSEIIYS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01306 224 SMART Cupin_1_3 71 198 IPR006045 -
Tsu07g01306 224 Gene3D Jelly Rolls 26 215 IPR014710 -
Tsu07g01306 224 CDD cupin_OxOx 27 211 - -
Tsu07g01306 224 Pfam Cupin 76 183 IPR006045 -
Tsu07g01306 224 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Tsu07g01306 224 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Tsu07g01306 224 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Tsu07g01306 224 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Tsu07g01306 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 14 203 - -
Tsu07g01306 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 203 - -
Tsu07g01306 224 SUPERFAMILY RmlC-like cupins 74 208 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01306 Tsu-Chr7 11464664 11465463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01306 12 181 Miscellaneous Gene Families AT3G05930 41.860 7.94e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01306 - - mtr:MTR_3g096330 350.903