Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01305 ATGGAATCAGATAAACCATCATTTACAACCCTAATCCTTGGATCATTCACAACAAGACCTTCATTCTCAATCTTACTTCTCATTTTCACCTTTCTCACTATCTTCTCTCTTCAATTTTCCACTCCTTCTCTCTTTCCCCTCTCAATCCTCAtttctcaacaacaacaatcctCTCTCGATCCAACCACTTGCTCTTCTTTTTTTCACGATGTTCCTCCAAGAAAAGTTATCATGTCAATCGTTGATTTCGGTGGCGTTGGTGATGGTAAAACCTCTAACACGCAATCGTTTCAAAGAGCGATTCGGTACATGCAACGTTTTCAAAATAAAGGTGGATCACAGCTTAATATTCCCGCTGGAATATGGCTTACTGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCATGGTGCTGTTCTTCTCGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCTTTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACACATTAGCCTTATACATGCAAATGGTGTCCGTAATGTTGTTATCACaggAGAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACACTGGAGCACACAAGAGGCCACCTCCTTGAACTCATGAACTCAGAAAATGTTCTTGTTTCAAACCTTACTTTTAGAAATTCTCCTTTTTGGACCATCCACCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTCAATGCCCCAAATACGGATGGCATAGATCCAGACTCGAGTACCAACGTGTGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCTAAGCCCAGCACAAACATCATAGTGAGGAGAATTTCAGGCACTACCCCAACTTGCTCTGGAGTAGGAATAGGCAGTGAAATGTCTGGTGGAATTTCAAATATTATAATCGAGAATTTGCACGTGTGGAATTCTGCAGCCGGCGTTCGCATAAAATCTGACAATGGCAGAGGTGGGTATATAAAAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCGAACGACCATCCTGATGATGGGTGGGATCCAAAAGCCGTTCCTAgatttaaagatattttaataaGCAACGTGGTCAGTGTAAATTCAACAAAATCTGCAGTTTTGGAAGGTGTGGAGGGTTCATCGTTTGAaggcttgtgcttcaagaataTTACTCTGCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTCGCTGGTTTTGCCAATGGGGTGTTCCCCGTTCCATGTCCTGAGTTGCAGAACAATGGCACTTCATCCTGGTGTTGA 1434 0.4073 MESDKPSFTTLILGSFTTRPSFSILLLIFTFLTIFSLQFSTPSLFPLSILISQQQQSSLDPTTCSSFFHDVPPRKVIMSIVDFGGVGDGKTSNTQSFQRAIRYMQRFQNKGGSQLNIPAGIWLTGSFNLTSDFTLFLHHGAVLLGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAKPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNIIIENLHVWNSAAGVRIKSDNGRGGYIKNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKSAVLEGVEGSSFEGLCFKNITLLGVALSATWHCEYVAGFANGVFPVPCPELQNNGTSSWC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01305 477 Pfam Glycosyl hydrolases family 28 174 454 IPR000743 GO:0004650|GO:0005975
Tsu07g01305 477 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 477 - -
Tsu07g01305 477 SMART pbh1 245 271 IPR006626 -
Tsu07g01305 477 SMART pbh1 334 355 IPR006626 -
Tsu07g01305 477 SMART pbh1 272 304 IPR006626 -
Tsu07g01305 477 SMART pbh1 306 328 IPR006626 -
Tsu07g01305 477 SMART pbh1 363 384 IPR006626 -
Tsu07g01305 477 PANTHER PECTIN LYASE-RELATED 14 477 - -
Tsu07g01305 477 SUPERFAMILY Pectin lyase-like 70 468 IPR011050 -
Tsu07g01305 477 Gene3D - 63 455 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01305 Tsu-Chr7 11460733 11464418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01305 1 477 Glycoside Hydrolase AT4G33440 67.432 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01305 - - mtr:MTR_3g096330 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01305 07 11460733 11464418 Tsu07g01305 07 11460733 11464418 ECH