Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01304 ATGGATTCGAATACTACTCAGGAATTCGATTATTTGTTCAAATTATTGATGATTGGTGACTCTGGAGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCGCTGATGCTTTCGAAGATCTTTCTCCTACAATTGGTGTTGATTTTAAGGTCAAATATGTCACTGTGGAGGGTAAAAAGTTGAAGCTTGCCATTTGGGATACAGCTGGTCAAGAGAGATTCAGAACACTAACGAGTTCTTATTACCGAGGTGCACAAGGGATCATTATGGCTTACGATGTTACTCGGCGAGATACATTTACAAATCTCTCTGAGGTATGGGCTAAGGAAGTAGAACTTTATTCAACAAATCCGGACTGCATCAAGATGCTTGTTGGAAATAAAGTGGATAAGGAGAGTGATAGAGTTGTGACAAAGAAAGAGGGAGTAGACTTTGCAAGGGAATGTGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGGGTTAACGTACAACATTGCTTTGAAGAGCTTGTTTTGAAGATCTTAGACACACCTAGCCTCTTAGCCGAGGGTTCGAAAGGGAACAAAAAGAACATTTTTAAGGACAAGGCACTCCAATCTGATTCATCTGCAAGTAGTTGTTGCTAA 627 0.4051 MDSNTTQEFDYLFKLLMIGDSGVGKSSLLLCFTADAFEDLSPTIGVDFKVKYVTVEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRDTFTNLSEVWAKEVELYSTNPDCIKMLVGNKVDKESDRVVTKKEGVDFARECGCLFIECSAKTRVNVQHCFEELVLKILDTPSLLAEGSKGNKKNIFKDKALQSDSSASSCC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01304 208 Gene3D - 5 208 IPR027417 -
Tsu07g01304 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 183 IPR027417 -
Tsu07g01304 208 SMART arf_sub_2 1 178 - -
Tsu07g01304 208 ProSiteProfiles small GTPase Ras family profile. 3 208 IPR001806 GO:0003924|GO:0005525
Tsu07g01304 208 PANTHER DRAB5-RELATED 1 208 - -
Tsu07g01304 208 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Tsu07g01304 208 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Tsu07g01304 208 SMART rab_sub_5 13 177 - -
Tsu07g01304 208 SMART ras_sub_4 10 177 - -
Tsu07g01304 208 PRINTS Transforming protein P21 ras signature 53 75 - -
Tsu07g01304 208 PRINTS Transforming protein P21 ras signature 117 130 - -
Tsu07g01304 208 PRINTS Transforming protein P21 ras signature 13 34 - -
Tsu07g01304 208 PRINTS Transforming protein P21 ras signature 35 51 - -
Tsu07g01304 208 PRINTS Transforming protein P21 ras signature 152 174 - -
Tsu07g01304 208 CDD Rab18 13 174 - -
Tsu07g01304 208 PANTHER SMALL GTPASE FAMILY RAB PROTEIN 1 208 - -
Tsu07g01304 208 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Tsu07g01304 208 SMART ran_sub_2 18 207 - -
Tsu07g01304 208 ProSiteProfiles small GTPase Rab1 family profile. 8 208 - -
Tsu07g01304 208 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01304 Tsu-Chr7 11445780 11451656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01304 14 167 EF-hand Containing Proteins AT5G27540 26.250 3.13e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01304 K07910 - gmx:100779729 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00649 02 5489843 5493169 Tsu07g01304 07 11445780 11451656 PCT